RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 D6RAR5 112 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 MID1O15344 667 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 CBX7O95931 251 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 PLATP00750 562 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 APOC3P02656 99 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 ALPPL2P10696 532 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 TYRP14679 529 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 XPAP23025 273 aaPredicted RBP9.97□□□□□ -0.81
USP54-204ENST00000422491 TRHRP34981 398 aaPredicted RBP9.97□□□□□ -0.81
USP54-204ENST00000422491 SLC11A1P49279 550 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 MAZP56270 477 aaKnown RBP9.97□□□□□ -0.81
USP54-204ENST00000422491 SEC61A1P61619 476 aaKnown RBP9.97□□□□□ -0.81
USP54-204ENST00000422491 PLD1Q13393 1074 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 ACSM3Q53FZ2 586 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 HENMT1Q5T8I9 393 aaKnown RBP9.97□□□□□ -0.81
USP54-204ENST00000422491 PLBD1Q6P4A8 553 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 TMUB2Q71RG4 321 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 SZRD1Q7Z422 152 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 ADCK2Q7Z695 626 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 UBE2Q1Q7Z7E8 422 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 TMEM173Q86WV6 379 aaPredicted RBP9.97□□□□□ -0.81
USP54-204ENST00000422491 GID4Q8IVV7 300 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 NKAIN4Q8IVV8 208 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 IZUMO1Q8IYV9 350 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 OR6V1Q8N148 313 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 OR2T33Q8NG76 320 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 KISS1RQ969F8 398 aaPredicted RBP9.97□□□□□ -0.81
USP54-204ENST00000422491 UBE2E3Q969T4 207 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 SLC38A3Q99624 504 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 CPEB1Q9BZB8 566 aaKnown RBP9.97□□□□□ -0.81
USP54-204ENST00000422491 ANKRD19PQ9H560 264 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 EVA1AQ9H8M9 152 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 NTMQ9P121 344 aa9.97□□□□□ -0.81
USP54-204ENST00000422491 MTCL1Q9Y4B5 1905 aaKnown RBP9.96□□□□□ -0.81
USP54-204ENST00000422491 DAPL1A0PJW8 107 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 FAM74A7A6NL05 159 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 HNRNPCL2B2RXH8 293 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 MT-ND5P03915 603 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 HIST1H2ABP04908 130 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 ASGR2P07307 311 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 ADRB1P08588 477 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 PPP3CBP16298 524 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 TYRP1P17643 537 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 RPL17P18621 184 aaKnown RBP9.96□□□□□ -0.81
USP54-204ENST00000422491 PBLDP30039 288 aaPredicted RBP9.96□□□□□ -0.81
USP54-204ENST00000422491 ST3GAL3Q11203 375 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 MAPK14Q16539 360 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 ZNF658BQ4V348 819 aaPredicted RBP9.96□□□□□ -0.81
USP54-204ENST00000422491 FAM74A3Q4VXF1 159 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 PABPC1L2AQ5JQF8 200 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 SLC25A25Q6KCM7 469 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 C22orf39Q6P5X5 142 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 NHLRC1Q6VVB1 395 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 HIST3H2AQ7L7L0 130 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 SYT9Q86SS6 491 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 KRT78Q8N1N4 520 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 OR13C5Q8NGS8 318 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 HIST1H2ACQ93077 130 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 TIFAQ96CG3 184 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 ELP4Q96EB1 424 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 ARHGDIGQ99819 225 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 UQCC2Q9BRT2 126 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 RIOK2Q9BVS4 552 aaKnown RBP9.96□□□□□ -0.81
USP54-204ENST00000422491 MED20Q9H944 212 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 ACSS1Q9NUB1 689 aaPredicted RBP9.96□□□□□ -0.81
USP54-204ENST00000422491 AHSPQ9NZD4 102 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 FBXL3Q9UKT7 428 aa9.96□□□□□ -0.81
USP54-204ENST00000422491 TRAV1-2A0A0B4J238 106 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 HMSDA8MTL9 139 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 SDC3O75056 442 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 HMGN1P05114 100 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 GCGRP47871 477 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 PSMA6P60900 246 aaKnown RBP9.96□□□□□ -0.82
USP54-204ENST00000422491 STXBP1P61764 594 aaKnown RBP9.96□□□□□ -0.82
USP54-204ENST00000422491 MLC1Q15049 377 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 ZNF697Q5TEC3 545 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 KHDRBS2Q5VWX1 349 aaKnown RBP9.96□□□□□ -0.82
USP54-204ENST00000422491 ZNF626Q68DY1 528 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 RPTNQ6XPR3 784 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 MEPCEQ7L2J0 689 aaKnown RBP9.96□□□□□ -0.82
USP54-204ENST00000422491 FAM129CQ86XR2 697 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 MCATQ8IVS2 390 aaKnown RBP9.96□□□□□ -0.82
USP54-204ENST00000422491 PDZD9Q8IXQ8 264 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 GJD3Q8N144 294 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 SLC44A3Q8N4M1 653 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 TRAM1L1Q8N609 369 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 OR5T2Q8NGG2 359 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 OR5M9Q8NGP3 310 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 THEM6Q8WUY1 208 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 ACOT11Q8WXI4 607 aaPredicted RBP9.96□□□□□ -0.82
USP54-204ENST00000422491 AUTS2Q8WXX7 1259 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 NR4A3Q92570 626 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 YIPF4Q9BSR8 244 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 NDC1Q9BTX1 674 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 HCAR1Q9BXC0 346 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 LHX9Q9NQ69 397 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 ZNF69Q9UC07 566 aa9.96□□□□□ -0.82
USP54-204ENST00000422491 PCDHGA9Q9Y5G4 932 aaKnown RBP9.96□□□□□ -0.82
USP54-204ENST00000422491 COL4A3Q01955 1670 aa9.95□□□□□ -0.82
USP54-204ENST00000422491 PRR23D1E9PI22 279 aaPredicted RBP9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms