RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 GTPBP1O00178 669 aaKnown RBP11.31□□□□□ -0.6
SKA1-203ENST00000417656 CCL21O00585 134 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 ZIC3O60481 467 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 BCAS1O75363 584 aaPredicted RBP11.31□□□□□ -0.6
SKA1-203ENST00000417656 ARAFP10398 606 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 BMP7P18075 431 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 GPX2P18283 190 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 RPS4Y1P22090 263 aaKnown RBP11.31□□□□□ -0.6
SKA1-203ENST00000417656 MSX1P28360 303 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 GCKP35557 465 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 CRISP3P54108 245 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 B3GALT5-AS1P59052 145 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 PLAURQ03405 335 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 SKP2Q13309 424 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 CYLC2Q14093 348 aaPredicted RBP11.31□□□□□ -0.6
SKA1-203ENST00000417656 NHSL2Q5HYW2 709 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 WLSQ5T9L3 541 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 OR5M1Q8NGP8 315 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 NFKBIDQ8NI38 313 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 WDR60Q8WVS4 1066 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 ABTB1Q969K4 478 aaPredicted RBP11.31□□□□□ -0.6
SKA1-203ENST00000417656 RELTQ969Z4 430 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 ZG16BQ96DA0 208 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 TREX2Q9BQ50 279 aaPredicted RBP11.31□□□□□ -0.6
SKA1-203ENST00000417656 HHATLQ9HCP6 504 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 MED17Q9NVC6 651 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 THUMPD1Q9NXG2 353 aaKnown RBP11.31□□□□□ -0.6
SKA1-203ENST00000417656 CALML5Q9NZT1 146 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 ICAM5Q9UMF0 924 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 FLNCQ14315 2725 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 MED12Q93074 2177 aa11.31□□□□□ -0.6
SKA1-203ENST00000417656 AGAP5A6NIR3 686 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 FIGNL2A6NMB9 653 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 C5orf58C9J3I9 102 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 FAM47E-STBD1D6RA91 191 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 ZNF264O43296 627 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 SHOX2O60902 331 aaPredicted RBP11.3□□□□□ -0.6
SKA1-203ENST00000417656 CYP7B1O75881 506 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 NUDT14O95848 222 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 ACTL6AO96019 429 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 CSTAP01040 98 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 UBTFL6P0CB48 400 aaPredicted RBP11.3□□□□□ -0.6
SKA1-203ENST00000417656 COX4I1P13073 169 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 P2RX1P51575 399 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 ZNF41P51814 821 aaPredicted RBP11.3□□□□□ -0.6
SKA1-203ENST00000417656 SUMO3P55854 103 aaPredicted RBP11.3□□□□□ -0.6
SKA1-203ENST00000417656 GFRA1P56159 465 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 FOXF1Q12946 379 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 CYP51A1Q16850 503 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 PLPPR5Q32ZL2 321 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 GXYLT1Q4G148 440 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 VASNQ6EMK4 673 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 ZNF585AQ6P3V2 769 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 EIF3MQ7L2H7 374 aaKnown RBP11.3□□□□□ -0.6
SKA1-203ENST00000417656 PIGWQ7Z7B1 504 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 RPRMLQ8N4K4 120 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 FAM71CQ8NEG0 241 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 RP9Q8TA86 221 aaKnown RBP11.3□□□□□ -0.6
SKA1-203ENST00000417656 OIT3Q8WWZ8 545 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 LRRC58Q96CX6 371 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 CCDC120Q96HB5 630 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 CCT8L2Q96SF2 557 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 TIMP4Q99727 224 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 NPAS1Q99742 590 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 THUMPD3Q9BV44 507 aaKnown RBP11.3□□□□□ -0.6
SKA1-203ENST00000417656 TP63Q9H3D4 680 aaPredicted RBP11.3□□□□□ -0.6
SKA1-203ENST00000417656 SUCOQ9UBS9 1254 aaKnown RBP11.3□□□□□ -0.6
SKA1-203ENST00000417656 CAMK2AQ9UQM7 478 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 ARL2BPQ9Y2Y0 163 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 MEMO1Q9Y316 297 aa11.3□□□□□ -0.6
SKA1-203ENST00000417656 MRPS18CQ9Y3D5 142 aaKnown RBP11.3□□□□□ -0.6
SKA1-203ENST00000417656 A0A087WZY1 265 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 OR2M5A3KFT3 312 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 H3BML4 177 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 EIF4E2O60573 245 aaKnown RBP11.29□□□□□ -0.6
SKA1-203ENST00000417656 LDLRP01130 860 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 DBIP07108 87 aaKnown RBP11.29□□□□□ -0.6
SKA1-203ENST00000417656 ESRRAP11474 423 aaPredicted RBP11.29□□□□□ -0.6
SKA1-203ENST00000417656 NID1P14543 1247 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 ZNF17P17021 662 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 PGM1P36871 562 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 STARP49675 285 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 PER3P56645 1201 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 CDK6Q00534 326 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 SCARB2Q14108 478 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 GNA13Q14344 377 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 TMEM44Q2T9K0 475 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 RABL3Q5HYI8 236 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 MRPL2Q5T653 305 aaKnown RBP11.29□□□□□ -0.6
SKA1-203ENST00000417656 AP1ARQ63HQ0 302 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 AAGABQ6PD74 315 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 ZNF836Q6ZNA1 936 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 VRK2Q86Y07 508 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 PTOV1Q86YD1 416 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 PEX5LQ8IYB4 626 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 ULK2Q8IYT8 1036 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 MARVELD2Q8N4S9 558 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 PCYOX1LQ8NBM8 494 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 OR52P1PQ8NH57 321 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 BBS10Q8TAM1 723 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms