RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 IGHV1-45A0A0A0MS14 117 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.92□□□□□ -0.34
GPNMB-203ENST00000409458 SPAARA0A1B0GVQ0 90 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 SCDO00767 359 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 OIP5O43482 229 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 PIP5K1CO60331 668 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 ZNF354AO60765 605 aaPredicted RBP12.92□□□□□ -0.34
GPNMB-203ENST00000409458 DKK1O94907 266 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 COX6A1P12074 109 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 PTNP21246 168 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 TBXA2RP21731 343 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 LCN1P31025 176 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 KRT20P35900 424 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 FOLR3P41439 243 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 ZSWIM7Q19AV6 140 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 ZNF550Q7Z398 422 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 LINC00471Q8N535 108 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 FAM71CQ8NEG0 241 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 WDR36Q8NI36 951 aaKnown RBP12.92□□□□□ -0.34
GPNMB-203ENST00000409458 GRHL3Q8TE85 626 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 OIT3Q8WWZ8 545 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 ACOT11Q8WXI4 607 aaPredicted RBP12.92□□□□□ -0.34
GPNMB-203ENST00000409458 SLC35B4Q969S0 331 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 HRASLS5Q96KN8 279 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 PHOX2BQ99453 314 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 GPA33Q99795 319 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 RTN4RQ9BZR6 473 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 UCK2Q9BZX2 261 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 ING2Q9H160 280 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 PADI1Q9ULC6 663 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 SLC35A3Q9Y2D2 325 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 PCDHGA6Q9Y5G7 932 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 HS3ST3B1Q9Y662 390 aa12.92□□□□□ -0.34
GPNMB-203ENST00000409458 PCNX2A6NKB5 2137 aa12.91□□□□□ -0.34
GPNMB-203ENST00000409458 A0A0B4J2E0 115 aa12.91□□□□□ -0.34
GPNMB-203ENST00000409458 A0A1B0GX12 115 aa12.91□□□□□ -0.34
GPNMB-203ENST00000409458 NADKO95544 446 aaPredicted RBP12.91□□□□□ -0.34
GPNMB-203ENST00000409458 FTH1P19P0C7X4 201 aa12.91□□□□□ -0.34
GPNMB-203ENST00000409458 HPGDP15428 266 aa12.91□□□□□ -0.34
GPNMB-203ENST00000409458 CHMP24386 653 aa12.91□□□□□ -0.34
GPNMB-203ENST00000409458 RYKP34925 604 aa12.91□□□□□ -0.34
GPNMB-203ENST00000409458 RPS18P62269 152 aaKnown RBP12.91□□□□□ -0.34
GPNMB-203ENST00000409458 PSPHP78330 225 aa12.91□□□□□ -0.34
GPNMB-203ENST00000409458 IL5RAQ01344 420 aa12.91□□□□□ -0.34
GPNMB-203ENST00000409458 MEP1AQ16819 746 aa12.91□□□□□ -0.34
GPNMB-203ENST00000409458 LAIR2Q6ISS4 152 aa12.91□□□□□ -0.34
GPNMB-203ENST00000409458 C1orf94Q6P1W5 598 aa12.91□□□□□ -0.34
GPNMB-203ENST00000409458 ZNF613Q6PF04 617 aa12.91□□□□□ -0.34
GPNMB-203ENST00000409458 PRICKLE2Q7Z3G6 844 aa12.91□□□□□ -0.34
GPNMB-203ENST00000409458 APLFQ8IW19 511 aaPredicted RBP12.91□□□□□ -0.34
GPNMB-203ENST00000409458 SETD9Q8NE22 299 aa12.91□□□□□ -0.34
GPNMB-203ENST00000409458 OR8K3Q8NH51 312 aa12.91□□□□□ -0.34
GPNMB-203ENST00000409458 CNIH3Q8TBE1 160 aa12.91□□□□□ -0.34
GPNMB-203ENST00000409458 FBLIM1Q8WUP2 373 aa12.91□□□□□ -0.34
GPNMB-203ENST00000409458 ZNF700Q9H0M5 742 aa12.91□□□□□ -0.34
GPNMB-203ENST00000409458 A0A1B0GWA3 101 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 WWP2O00308 870 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 SOCS6O14544 535 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 FOXD2O60548 495 aaPredicted RBP12.9□□□□□ -0.34
GPNMB-203ENST00000409458 SMNDC1O75940 238 aaKnown RBP eCLIP12.9□□□□□ -0.34
GPNMB-203ENST00000409458 SOX14O95416 240 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 TP53P04637 393 aaPredicted RBP12.9□□□□□ -0.34
GPNMB-203ENST00000409458 CELA2AP08217 269 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 IGFBP1P08833 259 aaPredicted RBP12.9□□□□□ -0.34
GPNMB-203ENST00000409458 UBL4AP11441 157 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 OSMP13725 252 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 GGT2P36268 569 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 ADH7P40394 386 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 OMPP47874 163 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 RPS6KA3P51812 740 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 PNLIPRP2P54317 469 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 NRG3P56975 720 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 SKP2Q13309 424 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 APOFQ13790 326 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 KCTD21Q4G0X4 260 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 MBOAT2Q6ZWT7 520 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 NRMQ8IXM6 262 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 TOR1AIP2Q8NFQ8 470 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 PHOSPHO1Q8TCT1 267 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 FAM46AQ96IP4 442 aaKnown RBP12.9□□□□□ -0.34
GPNMB-203ENST00000409458 APOL4Q9BPW4 351 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 IRF2BPLQ9H1B7 796 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 TMEM27Q9HBJ8 222 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 AASSQ9UDR5 926 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 ENOPH1Q9UHY7 261 aa12.9□□□□□ -0.34
GPNMB-203ENST00000409458 PPM1BO75688 479 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 ZFAND5O76080 213 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 CDK4P11802 303 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 TCN2P20062 427 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 CRISP1P54107 249 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 ESRRGP62508 458 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 BTBD16Q32M84 506 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 KIRREL2Q6UWL6 708 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 CD300LDQ6UXZ3 194 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 ENTHD1Q8IYW4 607 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 CADM2Q8N3J6 435 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 LSMEM1Q8N8F7 131 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 POGLUT1Q8NBL1 392 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 OR5L2Q8NGL0 311 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 PIGXQ8TBF5 258 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms