RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ZER1Q7Z7L7 766 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 LRRTM4Q86VH4 590 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 CMIPQ8IY22 773 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 RPLP0P6Q8NHW5 317 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 SLC25A36Q96CQ1 311 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 ZSCAN32Q9NX65 697 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 FBXL2Q9UKC9 423 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 PCDHGA9Q9Y5G4 932 aaKnown RBP11.19□□□□□ -0.62
HMGB1-206ENST00000405805 SCN2BO60939 215 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 HMGN1P05114 100 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 CSN2P05814 226 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 ASGR2P07307 311 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 TLX1P31314 330 aaPredicted RBP11.19□□□□□ -0.62
HMGB1-206ENST00000405805 GZMMP51124 257 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 PSPHP78330 225 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 TEKQ02763 1124 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 TCEAL5Q5H9L2 206 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 ZNF354BQ96LW1 612 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 PITX2Q99697 317 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 C1QTNF7Q9BXJ2 289 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 GABARAPL3Q9BY60 117 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 PIGUQ9H490 435 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 ASIC5Q9NY37 505 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 RASD1Q9Y272 281 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 PLPP1O14494 284 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 ABLIM3O94929 683 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 SYPP08247 313 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 CSF3P09919 207 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 CERS1P27544 350 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 SHC1P29353 583 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 RAE1P78406 368 aaKnown RBP11.18□□□□□ -0.62
HMGB1-206ENST00000405805 CHAF1BQ13112 559 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 SYT14P1Q58G82 188 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 ULK3Q6PHR2 472 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 VITQ6UXI7 678 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 ESPNLQ6ZVH7 1005 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 TIPARPQ7Z3E1 657 aaKnown RBP11.18□□□□□ -0.62
HMGB1-206ENST00000405805 TMED4Q7Z7H5 227 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 POGLUT1Q8NBL1 392 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 OR4Q3Q8NH05 313 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 C1orf216Q8TAB5 229 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 SGK3Q96BR1 496 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 PELOQ9BRX2 385 aaKnown RBP11.18□□□□□ -0.62
HMGB1-206ENST00000405805 SBF1O95248 1867 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 TRBV5-4A0A0C4DH59 114 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 RGS13O14921 159 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 FMO6PO60774 539 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 RRAS2P62070 204 aaPredicted RBP11.18□□□□□ -0.62
HMGB1-206ENST00000405805 TAF13Q15543 124 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 TMEM81Q6P7N7 255 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 ACBD7Q8N6N7 88 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 TRMT61AQ96FX7 289 aaKnown RBP11.18□□□□□ -0.62
HMGB1-206ENST00000405805 ZDHHC12Q96GR4 267 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 ZNF582Q96NG8 517 aaPredicted RBP11.18□□□□□ -0.62
HMGB1-206ENST00000405805 BTBD1Q9H0C5 482 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 GABARAPL1Q9H0R8 117 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 OR10A4Q9H209 315 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 AK6Q9Y3D8 172 aaKnown RBP11.18□□□□□ -0.62
HMGB1-206ENST00000405805 A0A0G2JMP0 313 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 A0A0X1KG70 313 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 B4DXG7 233 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 UGDHO60701 494 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 ARSBP15848 533 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 FUT1P19526 365 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 GSTM3P21266 225 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 PUM1Q14671 1186 aaKnown RBP eCLIP11.18□□□□□ -0.621e-7■■■□□ 17.8
HMGB1-206ENST00000405805 LTB4RQ15722 352 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 MEDAGQ5VYS4 303 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 KLHDC8AQ8IYD2 350 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 HDDC3Q8N4P3 179 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 GATSQ8NAP1 163 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 OR7G2Q8NG99 324 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 OR4M2Q8NGB6 313 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 LHFPL5Q8TAF8 219 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 CREB3L1Q96BA8 519 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 CD180Q99467 661 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 OR51J1Q9H342 316 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 METTL17Q9H7H0 456 aaPredicted RBP11.18□□□□□ -0.62
HMGB1-206ENST00000405805 FBRSQ9HAH7 460 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 SPACA6W5XKT8 324 aa11.18□□□□□ -0.62
HMGB1-206ENST00000405805 GRXCR1A8MXD5 290 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 GNRH1P01148 92 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 TFP02787 698 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 GIFP27352 417 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 HTR2AP28223 471 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 KIR2DL3P43628 341 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 GBX2P52951 348 aaPredicted RBP11.17□□□□□ -0.62
HMGB1-206ENST00000405805 MLLT11Q13015 90 aaPredicted RBP11.17□□□□□ -0.62
HMGB1-206ENST00000405805 EXOSC2Q13868 293 aaKnown RBP11.17□□□□□ -0.62
HMGB1-206ENST00000405805 C1orf189Q5VU69 101 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 C18orf63Q68DL7 685 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 OR4D10Q8NGI6 311 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 DZANK1Q9NVP4 752 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 MARK1Q9P0L2 795 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 GNG8Q9UK08 70 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 PCDHGB2Q9Y5G2 931 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 A0A1B0GV50 99 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 ZAR1LA6NP61 321 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 SLC9A3R1O14745 358 aaPredicted RBP11.17□□□□□ -0.62
HMGB1-206ENST00000405805 SHOXO15266 292 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms