RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 ATAD3BQ5T9A4 648 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 FNDC7Q5VTL7 733 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 TYW3Q6IPR3 259 aaKnown RBP8.4□□□□□ -1.06
VPS53-203ENST00000401468 C16orf89Q6UX73 402 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 FRRS1Q6ZNA5 592 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 LRRC74BQ6ZQY2 392 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 RTL4Q6ZR62 310 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 RINLQ6ZS11 566 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 YTHDF3Q7Z739 585 aaKnown RBP8.4□□□□□ -1.06
VPS53-203ENST00000401468 ZAR1Q86SH2 424 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 ZZZ3Q8IYH5 903 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 ARHGAP24Q8N264 748 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 COX18Q8N8Q8 333 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 FBXO30Q8TB52 745 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 SPPL2AQ8TCT8 520 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 ASB15Q8WXK1 588 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 RAB8BQ92930 207 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 RMND5BQ96G75 393 aaPredicted RBP8.4□□□□□ -1.06
VPS53-203ENST00000401468 REXO5Q96IC2 774 aaKnown RBP8.4□□□□□ -1.06
VPS53-203ENST00000401468 UTP23Q9BRU9 249 aaKnown RBP8.4□□□□□ -1.06
VPS53-203ENST00000401468 THUMPD3Q9BV44 507 aaKnown RBP8.4□□□□□ -1.06
VPS53-203ENST00000401468 TRIM8Q9BZR9 551 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 SLC38A1Q9H2H9 487 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 PROK2Q9HC23 129 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 FBXO34Q9NWN3 711 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 ABI3Q9P2A4 366 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 P2RX2Q9UBL9 471 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 SUCOQ9UBS9 1254 aaKnown RBP8.4□□□□□ -1.06
VPS53-203ENST00000401468 SEC14L3Q9UDX4 400 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 CD300AQ9UGN4 299 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 MRTO4Q9UKD2 239 aaKnown RBP8.4□□□□□ -1.06
VPS53-203ENST00000401468 ABCG2Q9UNQ0 655 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 DOCK7Q96N67 2140 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 ADGRG4Q8IZF6 3080 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 A0A0G2JMM0 328 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 A0A0G2JPF8 293 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 A0A1W2PPB8 328 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 A0A1W2PQD3 144 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 A0A1W2PRS3 328 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 PRORSD1PA6NEY8 169 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 KIR3DP1A8MWS1 328 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 B2RBV5 119 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 HNRNPCL2B2RXH8 293 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 HNRNPCL3B7ZW38 293 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 FADS1O60427 444 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 FCMRO60667 390 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 STX11O75558 287 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 GCM2O75603 506 aaPredicted RBP8.39□□□□□ -1.07
VPS53-203ENST00000401468 PDE9AO76083 593 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 H6PDO95479 791 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 HNRNPCL4P0DMR1 293 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 CYP4B1P13584 511 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 HSD17B1P14061 328 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 ETS2P15036 469 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 TBXA2RP21731 343 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 PCGF2P35227 344 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 CASP9P55211 416 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 FBXW4P57775 412 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 SLC25A3Q00325 362 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 GNA13Q14344 377 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 SYPL1Q16563 259 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 ZNF630Q2M218 657 aaPredicted RBP8.39□□□□□ -1.07
VPS53-203ENST00000401468 VMACQ2NL98 169 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 KLHL26Q53HC5 615 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 NKAPLQ5M9Q1 402 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 GCNT6Q5T4J0 391 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 ERICH5Q6P6B1 374 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 ANGPTL8Q6UXH0 198 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 CCDC80Q76M96 950 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 SLC30A8Q8IWU4 369 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 CYP4Z2PQ8N1L4 340 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 FBXW8Q8N3Y1 598 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 TMEM156Q8N614 296 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 C11orf65Q8NCR3 313 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 FAM71CQ8NEG0 241 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 OR10A6Q8NH74 314 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 XAGE5Q8WWM1 108 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 JADE3Q92613 823 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 OTUB1Q96FW1 271 aaPredicted RBP8.39□□□□□ -1.07
VPS53-203ENST00000401468 CCDC120Q96HB5 630 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 TMEM19Q96HH6 336 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 TREX2Q9BQ50 279 aaPredicted RBP8.39□□□□□ -1.07
VPS53-203ENST00000401468 RSPO3Q9BXY4 272 aaPredicted RBP8.39□□□□□ -1.07
VPS53-203ENST00000401468 HPF1Q9NWY4 346 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 CALML5Q9NZT1 146 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 CNIH4Q9P003 139 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 LRFN1Q9P244 771 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 KCNE5Q9UJ90 142 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 CNOT11Q9UKZ1 510 aaKnown RBP8.39□□□□□ -1.07
VPS53-203ENST00000401468 PRPF19Q9UMS4 504 aaKnown RBP8.39□□□□□ -1.07
VPS53-203ENST00000401468 OR10H1Q9Y4A9 318 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 MED13LQ71F56 2210 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 MED12LQ86YW9 2145 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 CSMD2Q7Z408 3487 aa8.39□□□□□ -1.07
VPS53-203ENST00000401468 IGLV3-32A0A0A0MS00 114 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 AGAP5A6NIR3 686 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 ALG1L2C9J202 215 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 C19orf84I3L1E1 186 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 EBAG9O00559 213 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 TP53I11O14683 189 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms