RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 COMMD7Q86VX2 200 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 OR2T33Q8NG76 320 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 OR13C2Q8NGS9 318 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 PINK1Q9BXM7 581 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 MBNL1Q9NR56 388 aaKnown RBP19.51■□□□□ 0.71
CTCF-202ENST00000401394 AK6Q9Y3D8 172 aaKnown RBP19.51■□□□□ 0.71
CTCF-202ENST00000401394 NUP210Q8TEM1 1887 aaPredicted RBP19.51■□□□□ 0.71
CTCF-202ENST00000401394 IGLON5A6NGN9 336 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 POM121CA8CG34 1229 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 RAF1P04049 648 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 ATF1P18846 271 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 CLDN12P56749 244 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 TP53I3Q53FA7 332 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 METAP1DQ6UB28 335 aaPredicted RBP19.51■□□□□ 0.71
CTCF-202ENST00000401394 OR51Q1Q8NH59 317 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 RFKQ969G6 155 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 YIPF5Q969M3 257 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 INSM2Q96T92 566 aaPredicted RBP19.51■□□□□ 0.71
CTCF-202ENST00000401394 ZNF559Q9BR84 538 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 PIGUQ9H490 435 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 DPEP2Q9H4A9 486 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 ING4Q9UNL4 249 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 EXOGQ9Y2C4 368 aaKnown RBP19.51■□□□□ 0.71
CTCF-202ENST00000401394 ASB4Q9Y574 426 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 PRUNE2Q8WUY3 3088 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 RHOP08100 348 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 HK1P19367 917 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 SLC9A5Q14940 896 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 FNDC3BQ53EP0 1204 aaKnown RBP19.5■□□□□ 0.71
CTCF-202ENST00000401394 ARHGAP15Q53QZ3 475 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 Q6ZTK2 550 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 TOMM5Q8N4H5 51 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 OR2A1Q8NGT9 310 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 ABHD4Q8TB40 342 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 KISS1RQ969F8 398 aaPredicted RBP19.5■□□□□ 0.71
CTCF-202ENST00000401394 BCL2L10Q9HD36 194 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 SSNA1O43805 119 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 NDUFV2P19404 249 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 POU3F2P20265 443 aaPredicted RBP19.5■□□□□ 0.71
CTCF-202ENST00000401394 ITGB8P26012 769 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 RGS1Q08116 209 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 TMEM65Q6PI78 240 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 ZC3H14Q6PJT7 736 aaKnown RBP19.5■□□□□ 0.71
CTCF-202ENST00000401394 OR7G2Q8NG99 324 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 ACOT11Q8WXI4 607 aaPredicted RBP19.5■□□□□ 0.71
CTCF-202ENST00000401394 GPR174Q9BXC1 333 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 RBCK1Q9BYM8 510 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 B3GNT2Q9NY97 397 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 KCMF1Q9P0J7 381 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 TRBV23OR9-2A0A075B6M9 112 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 J3QRE1 110 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 GPR171O14626 319 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 DHCR24Q15392 516 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 PLPP4Q5VZY2 271 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 LRRC28Q86X40 367 aaPredicted RBP19.5■□□□□ 0.71
CTCF-202ENST00000401394 DERL3Q96Q80 235 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 RBP7Q96R05 134 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 METTL17Q9H7H0 456 aaPredicted RBP19.5■□□□□ 0.71
CTCF-202ENST00000401394 ISYNA1Q9NPH2 558 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 PRDM7Q9NQW5 492 aa19.5■□□□□ 0.71
CTCF-202ENST00000401394 CDHR4A6H8M9 788 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 PEX12O00623 359 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 SLC19A2O60779 497 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 PROS1P07225 676 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 UBL4AP11441 157 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 HTR2AP28223 471 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 ACSL1P33121 698 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 CAMK2DQ13557 499 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 NIPAL3Q6P499 406 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 LILRA6Q6PI73 481 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 GET4Q7L5D6 327 aaPredicted RBP19.49■□□□□ 0.71
CTCF-202ENST00000401394 GHSRQ92847 366 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 OSTF1Q92882 214 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 MS4A6EQ96DS6 147 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 RSPRY1Q96DX4 576 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 ELP4Q96EB1 424 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 DEFB118Q96PH6 123 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 ARHGDIGQ99819 225 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 NFKBIL1Q9UBC1 381 aaPredicted RBP19.49■□□□□ 0.71
CTCF-202ENST00000401394 POLHQ9Y253 713 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 PRELID1Q9Y255 219 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 LAMA1P25391 3075 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 A0A0G2JPF8 293 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 RPS10-NUDT3A0A1W2PQS6 291 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 HNRNPCL2B2RXH8 293 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 IDSB3KWA1 339 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 HNRNPCL3B7ZW38 293 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 NUPL2O15504 423 aaKnown RBP19.49■□□□□ 0.71
CTCF-202ENST00000401394 HNRNPCL4P0DMR1 293 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 HIST1H1TP22492 207 aaPredicted RBP19.49■□□□□ 0.71
CTCF-202ENST00000401394 SPERTQ8NA61 448 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 OR2T35Q8NGX2 323 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 BRD7Q9NPI1 651 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 WASH6PQ9NQA3 447 aa19.49■□□□□ 0.71
CTCF-202ENST00000401394 APOBEC3BQ9UH17 382 aaKnown RBP19.49■□□□□ 0.71
CTCF-202ENST00000401394 G3V3Q6 166 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 TRIM3O75382 744 aaPredicted RBP19.48■□□□□ 0.71
CTCF-202ENST00000401394 DHFRP00374 187 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 FPR3P25089 353 aa19.48■□□□□ 0.71
CTCF-202ENST00000401394 NOGQ13253 232 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms