RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 ZNF708P17019 499 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 PTGER4P35408 488 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 CLK3P49761 638 aaKnown RBP6.37□□□□□ -1.39
LIMA1-202ENST00000394943 MTPNP58546 118 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 TRIM25Q14258 630 aaKnown RBP6.37□□□□□ -1.39
LIMA1-202ENST00000394943 ZNF550Q7Z398 422 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 ATG4DQ86TL0 474 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-202ENST00000394943 ARMC8Q8IUR7 673 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 TMEM251Q8N6I4 163 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 CDC26Q8NHZ8 85 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 NEIL3Q8TAT5 605 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 FAR1Q8WVX9 515 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 UTP4Q969X6 686 aaKnown RBP6.37□□□□□ -1.39
LIMA1-202ENST00000394943 RNF31Q96EP0 1072 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 ZNF607Q96SK3 696 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 TMEM43Q9BTV4 400 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 CADM1Q9BY67 442 aaKnown RBP6.37□□□□□ -1.39
LIMA1-202ENST00000394943 SNX8Q9Y5X2 465 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 SHANK1Q9Y566 2161 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 ADAMDEC1O15204 470 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 HS6ST1O60243 411 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 TPST2O60704 377 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 SEMA7AO75326 666 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 ZNF682O95780 498 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 GSNP06396 782 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 STSP08842 583 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 UBL4AP11441 157 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 PRKCAP17252 672 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 AGAP20933 346 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 RBM34P42696 430 aaKnown RBP6.36□□□□□ -1.39
LIMA1-202ENST00000394943 LHX2P50458 406 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 RPS26P62854 115 aaKnown RBP6.36□□□□□ -1.39
LIMA1-202ENST00000394943 ARG2P78540 354 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 CAPRIN1Q14444 709 aaKnown RBP6.36□□□□□ -1.39
LIMA1-202ENST00000394943 STK11Q15831 433 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 MAMDC2Q7Z304 686 aaPredicted RBP6.36□□□□□ -1.39
LIMA1-202ENST00000394943 GGNQ86UU5 652 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 SLC22A16Q86VW1 577 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 POU5F2Q8N7G0 328 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 FAM98AQ8NCA5 519 aaKnown RBP6.36□□□□□ -1.39
LIMA1-202ENST00000394943 OR2T12Q8NG77 320 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 OR52P1PQ8NH57 321 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 OR10A6Q8NH74 314 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 NFKBIDQ8NI38 313 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 STK35Q8TDR2 534 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 ZG16BQ96DA0 208 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 A0A0B4J2E0 115 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 A0A1B0GX12 115 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 NPIPB13A6NJU9 1138 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 B8ZZF3 427 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 NPIPB4C9JG80 1138 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 ESRRAP11474 423 aaPredicted RBP6.36□□□□□ -1.39
LIMA1-202ENST00000394943 EFNA1P20827 205 aaPredicted RBP6.36□□□□□ -1.39
LIMA1-202ENST00000394943 OPRM1P35372 400 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 SOAT1P35610 550 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 NUDT2P50583 147 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 RASSF2P50749 326 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 CBFBQ13951 182 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 FCRLBQ6BAA4 426 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 PEX5LQ8IYB4 626 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 B4GALNT2Q8NHY0 566 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 DMRTA2Q96SC8 542 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 ADOQ96SZ5 270 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 ZNF559Q9BR84 538 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 POTEKPQ9BYX7 375 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 SNX13Q9Y5W8 968 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 LAMA5O15230 3695 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 CXCR6O00574 342 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 SCDO00767 359 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 BCKDKO14874 412 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 KLF4O43474 513 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 OIP5O43482 229 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 ANP32DO95626 131 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 IFNA14P01570 189 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 THY1P04216 161 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 BCHEP06276 602 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 APOBEC1P41238 236 aaKnown RBP6.36□□□□□ -1.39
LIMA1-202ENST00000394943 CLDN18P56856 261 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 DMTNQ08495 405 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 PDZK1Q5T2W1 519 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 TNFAIP8L2Q6P589 184 aaPredicted RBP6.36□□□□□ -1.39
LIMA1-202ENST00000394943 IL20RBQ6UXL0 311 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 OR4D11Q8NGI4 311 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 SLC9A6Q92581 669 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 EFHD2Q96C19 240 aaPredicted RBP6.36□□□□□ -1.39
LIMA1-202ENST00000394943 SLC41A3Q96GZ6 507 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 DOHHQ9BU89 302 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 CALHM2Q9HA72 323 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 MED17Q9NVC6 651 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 ARMC1Q9NVT9 282 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 PLA2G3Q9NZ20 509 aa6.36□□□□□ -1.39
LIMA1-202ENST00000394943 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.36□□□□□ -1.39
LIMA1-202ENST00000394943 CD8B2A6NJW9 211 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 EFNA2O43921 213 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 SERPINB7O75635 380 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 OR5F1O95221 314 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 CRATP43155 626 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 P2RY4P51582 365 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 CTBP2P56545 445 aa6.35□□□□□ -1.39
LIMA1-202ENST00000394943 H3F3AP84243 136 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms