RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 SPDYE7PQ495Y7 208 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 DCST1Q5T197 706 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 SEZ6L2Q6UXD5 910 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 ANGPTL8Q6UXH0 198 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 KANSL1Q7Z3B3 1105 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 OAFQ86UD1 273 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 UBALD2Q8IYN6 164 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 OR4N4Q8N0Y3 316 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 BMPERQ8N8U9 685 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 CLDN23Q96B33 292 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 LRR1Q96L50 414 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 SLC38A2Q96QD8 506 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 OR4K3Q96R72 315 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 SLC17A9Q9BYT1 436 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 PITHD1Q9GZP4 211 aaPredicted RBP10.39□□□□□ -0.75
CUX1-204ENST00000393824 ENAMQ9NRM1 1142 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 TM7SF3Q9NS93 570 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 SEMA3GQ9NS98 782 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 ZNF275Q9NSD4 429 aaPredicted RBP10.39□□□□□ -0.75
CUX1-204ENST00000393824 COPS3Q9UNS2 423 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 ANGPT4Q9Y264 503 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 WDFY3Q8IZQ1 3526 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 GABRPO00591 440 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 OR10H3O60404 316 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 LDOC1O95751 146 aaPredicted RBP10.39□□□□□ -0.75
CUX1-204ENST00000393824 TGM6O95932 706 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 FGF2P09038 288 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 LIMS3P0CW19 117 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 LIMS4P0CW20 117 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 ARAFP10398 606 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 RBMS1P29558 406 aaKnown RBP10.39□□□□□ -0.75
CUX1-204ENST00000393824 LCN1P31025 176 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 TIA1P31483 386 aaKnown RBP eCLIP10.39□□□□□ -0.751e-6■■■■□ 21
CUX1-204ENST00000393824 IGFALSP35858 605 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 PITPNBP48739 271 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 VSX2P58304 361 aaPredicted RBP10.39□□□□□ -0.75
CUX1-204ENST00000393824 ZXDAP98168 799 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 DHODHQ02127 395 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 RPL6Q02878 288 aaKnown RBP10.39□□□□□ -0.75
CUX1-204ENST00000393824 ACSM1Q08AH1 577 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 SLC36A2Q495M3 483 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 PGBD2Q6P3X8 592 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 C3P1Q6ZMU1 363 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 MARCH9Q86YJ5 346 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 NRSN1Q8IZ57 195 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 FTMTQ8N4E7 242 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 TSTD1Q8NFU3 115 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 OR2T35Q8NGX2 323 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 ST8SIA2Q92186 375 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 AHCYL2Q96HN2 611 aaKnown RBP10.39□□□□□ -0.75
CUX1-204ENST00000393824 TEFMQ96QE5 360 aaKnown RBP10.39□□□□□ -0.75
CUX1-204ENST00000393824 PKP4Q99569 1192 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 SLC35A5Q9BS91 424 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 OR2AG1Q9H205 316 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 CHRDQ9H2X0 955 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 OSGEPL1Q9H4B0 414 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 REEP4Q9H6H4 257 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 ASB6Q9NWX5 421 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 SIT1Q9Y3P8 196 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 C10orf142B7Z368 130 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 PRODHO43272 600 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 SLC28A2O43868 658 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 IGHV4-34P06331 123 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 NMBP08949 121 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 ATP1B2P14415 290 aaPredicted RBP10.38□□□□□ -0.75
CUX1-204ENST00000393824 DRD2P14416 443 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 CD22P20273 847 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 GIPRP48546 466 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 CASP9P55211 416 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 RPS21P63220 83 aaKnown RBP10.38□□□□□ -0.75
CUX1-204ENST00000393824 CDK3Q00526 305 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 TMEM115Q12893 351 aaPredicted RBP10.38□□□□□ -0.75
CUX1-204ENST00000393824 DOC2AQ14183 400 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 TCEA2Q15560 299 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 CD300LDQ6UXZ3 194 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 CLRN3Q8NCR9 226 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 ATOH1Q92858 354 aaPredicted RBP10.38□□□□□ -0.75
CUX1-204ENST00000393824 KCTD12Q96CX2 325 aaKnown RBP10.38□□□□□ -0.75
CUX1-204ENST00000393824 MS4A3Q96HJ5 214 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 SHDQ96IW2 340 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 SFXN2Q96NB2 322 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 SEC22CQ9BRL7 303 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 ACTR6Q9GZN1 396 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 MS4A7Q9GZW8 240 aaPredicted RBP10.38□□□□□ -0.75
CUX1-204ENST00000393824 BTBD1Q9H0C5 482 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 FBRSQ9HAH7 460 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 MRPS17Q9Y2R5 130 aaKnown RBP10.38□□□□□ -0.75
CUX1-204ENST00000393824 CFAP54Q96N23 3096 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 GPR179Q6PRD1 2367 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 LATO43561 262 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 GPR37L1O60883 481 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 LILRB5O75023 590 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 SYPP08247 313 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 ZNF8P17098 575 aaPredicted RBP10.38□□□□□ -0.75
CUX1-204ENST00000393824 CALCRP30988 508 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 HOXA1P49639 335 aaPredicted RBP10.38□□□□□ -0.75
CUX1-204ENST00000393824 TAP2Q03519 686 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 TCTN3Q6NUS6 607 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 WASH2PQ6VEQ5 465 aa10.38□□□□□ -0.75
CUX1-204ENST00000393824 THOC6Q86W42 341 aaKnown RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms