RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 OR9Q1Q8NGQ5 310 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 PIGXQ8TBF5 258 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 SMIM10Q96HG1 83 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 CNPPD1Q9BV87 410 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 NUAK2Q9H093 628 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 KLHL25Q9H0H3 589 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 ANKRD19PQ9H560 264 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 CNIH4Q9P003 139 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 NTMQ9P121 344 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 DAPP1Q9UN19 280 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 DIMT1Q9UNQ2 313 aaKnown RBP14.41□□□□□ -0.1
CCDC40-202ENST00000374876 ZNF232Q9UNY5 417 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 IGHV5-51A0A0C4DH38 117 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 ISPDA4D126 451 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 SNTNA6NMZ2 147 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 ZIC2O95409 532 aaPredicted RBP14.41□□□□□ -0.1
CCDC40-202ENST00000374876 TRHRP34981 398 aaPredicted RBP14.41□□□□□ -0.1
CCDC40-202ENST00000374876 LSSP48449 732 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 HOXC5Q00444 222 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 RUNX2Q13950 521 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 ZNF181Q2M3W8 571 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 KLHL22Q53GT1 634 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 FRRS1Q6ZNA5 592 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 RAB11FIP2Q7L804 512 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 PEX5LQ8IYB4 626 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 OR2L13Q8N349 312 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 OR52I1Q8NGK6 324 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 RERGQ96A58 199 aaPredicted RBP14.41□□□□□ -0.1
CCDC40-202ENST00000374876 FAM46AQ96IP4 442 aaKnown RBP14.41□□□□□ -0.1
CCDC40-202ENST00000374876 SLC38A2Q96QD8 506 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 PRRG3Q9BZD7 231 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 STRADBQ9C0K7 418 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 SAP130Q9H0E3 1048 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 MTHFD2LQ9H903 347 aaPredicted RBP14.41□□□□□ -0.1
CCDC40-202ENST00000374876 OCIAD1Q9NX40 245 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 SEC14L4Q9UDX3 406 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 CHST2Q9Y4C5 530 aa14.41□□□□□ -0.1
CCDC40-202ENST00000374876 C2orf74A8MZ97 194 aa14.4□□□□□ -0.1
CCDC40-202ENST00000374876 TBX1O43435 398 aa14.4□□□□□ -0.1
CCDC40-202ENST00000374876 MED26O95402 600 aa14.4□□□□□ -0.1
CCDC40-202ENST00000374876 EIF2S1P05198 315 aaKnown RBP14.4□□□□□ -0.1
CCDC40-202ENST00000374876 CCL4P13236 92 aa14.4□□□□□ -0.1
CCDC40-202ENST00000374876 PORP16435 677 aaPredicted RBP14.4□□□□□ -0.1
CCDC40-202ENST00000374876 MYL12AP19105 171 aa14.4□□□□□ -0.1
CCDC40-202ENST00000374876 ENDOUP21128 410 aaKnown RBP14.4□□□□□ -0.1
CCDC40-202ENST00000374876 CD97P48960 835 aa14.4□□□□□ -0.1
CCDC40-202ENST00000374876 EFNB1P98172 346 aa14.4□□□□□ -0.1
CCDC40-202ENST00000374876 MLLT11Q13015 90 aaPredicted RBP14.4□□□□□ -0.1
CCDC40-202ENST00000374876 GDPGP1Q6ZNW5 385 aa14.4□□□□□ -0.1
CCDC40-202ENST00000374876 SLC22A16Q86VW1 577 aa14.4□□□□□ -0.1
CCDC40-202ENST00000374876 TMEM163Q8TC26 289 aa14.4□□□□□ -0.1
CCDC40-202ENST00000374876 LIN37Q96GY3 246 aaPredicted RBP14.4□□□□□ -0.1
CCDC40-202ENST00000374876 ZFYVE21Q9BQ24 234 aa14.4□□□□□ -0.1
CCDC40-202ENST00000374876 NEURL2Q9BR09 285 aa14.4□□□□□ -0.1
CCDC40-202ENST00000374876 POLE4Q9NR33 117 aa14.4□□□□□ -0.1
CCDC40-202ENST00000374876 PTGFRNQ9P2B2 879 aa14.4□□□□□ -0.1
CCDC40-202ENST00000374876 ZNF443Q9Y2A4 671 aaPredicted RBP14.4□□□□□ -0.1
CCDC40-202ENST00000374876 WDR45Q9Y484 360 aa14.4□□□□□ -0.1
CCDC40-202ENST00000374876 LOXL2Q9Y4K0 774 aa14.4□□□□□ -0.1
CCDC40-202ENST00000374876 SLC22A7Q9Y694 548 aa14.4□□□□□ -0.1
CCDC40-202ENST00000374876 LOC105369274A0A096LPK9 316 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 LOC102723532A0A0G2JNH3 316 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 HBQ1P09105 142 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 CPMP14384 443 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 PVRP15151 417 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 SHC2P98077 582 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 MAP4K2Q12851 820 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 TRA2AQ13595 282 aaKnown RBP eCLIP14.39□□□□□ -0.11
CCDC40-202ENST00000374876 COL9A2Q14055 689 aaPredicted RBP14.39□□□□□ -0.11
CCDC40-202ENST00000374876 LARS2Q15031 903 aaKnown RBP14.39□□□□□ -0.11
CCDC40-202ENST00000374876 PAQR6Q6TCH4 344 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 RASSF6Q6ZTQ3 369 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 LYSMD2Q8IV50 215 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 OR4N4Q8N0Y3 316 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 PARP16Q8N5Y8 322 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 ACOT11Q8WXI4 607 aaPredicted RBP14.39□□□□□ -0.11
CCDC40-202ENST00000374876 MCHR1Q99705 422 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 CMKLR1Q99788 373 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 ASPNQ9BXN1 380 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 PRDM9Q9NQV7 894 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 NDUFB11Q9NX14 153 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 CHCHD3Q9NX63 227 aaKnown RBP14.39□□□□□ -0.11
CCDC40-202ENST00000374876 TESQ9UGI8 421 aaKnown RBP14.39□□□□□ -0.11
CCDC40-202ENST00000374876 PILRAQ9UKJ1 303 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 POMT2Q9UKY4 750 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 STUB1Q9UNE7 303 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 SCN3AQ9NY46 2000 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 CCDC187A0A096LP49 1063 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 PNMA8CA0A1B0GUJ8 204 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 IRGMA1A4Y4 181 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 ZNF860A6NHJ4 632 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 SLC9B1P1A6NJY1 282 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 ZSCAN9O15535 394 aaPredicted RBP14.39□□□□□ -0.11
CCDC40-202ENST00000374876 PRODHO43272 600 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 DNAJB6O75190 326 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 ALOX12P18054 663 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 OMPP47874 163 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 DUSP5Q16690 384 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 DECR1Q16698 335 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 ARHGAP11BQ3KRB8 267 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms