RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 SIGLEC11Q96RL6 698 aa12.68□□□□□ -0.38
PTPRF-202ENST00000372405 ADOQ96SZ5 270 aa12.68□□□□□ -0.38
PTPRF-202ENST00000372405 ZNF559Q9BR84 538 aa12.68□□□□□ -0.38
PTPRF-202ENST00000372405 SEMA4CQ9C0C4 833 aa12.68□□□□□ -0.38
PTPRF-202ENST00000372405 LIN28AQ9H9Z2 209 aaKnown RBP12.68□□□□□ -0.38
PTPRF-202ENST00000372405 NDUFA13Q9P0J0 144 aa12.68□□□□□ -0.38
PTPRF-202ENST00000372405 COPS7AQ9UBW8 275 aa12.68□□□□□ -0.38
PTPRF-202ENST00000372405 TEX51A0A1B0GUA7 166 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 A0A1B0GWA3 101 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 SAGE2PA6NJ88 616 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 CDC42EP2O14613 210 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 TO15178 435 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 OIP5O43482 229 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 UTS2O95399 124 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 CSTAP01040 98 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 ZNF806P0C7X5 589 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 PCMT1P22061 227 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 CCKBRP32239 447 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 NR0B1P51843 470 aaKnown RBP12.67□□□□□ -0.38
PTPRF-202ENST00000372405 EMP2P54851 167 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 CLDN6P56747 220 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 CDC42P60953 191 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 DCAF7P61962 342 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 CNPY1Q3B7I2 92 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 ZNF613Q6PF04 617 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 BORAQ6PGQ7 559 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 CMIPQ8IY22 773 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 LSMEM1Q8N8F7 131 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 GATSQ8NAP1 163 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 SUMF1Q8NBK3 374 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 PFN4Q8NHR9 129 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 GRHL3Q8TE85 626 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 SLC35B4Q969S0 331 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 NODALQ96S42 347 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 RTN4RQ9BZR6 473 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 EVA1AQ9H8M9 152 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 AMBNQ9NP70 447 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 UBQLN4Q9NRR5 601 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 C20orf141Q9NUB4 165 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 IMPAD1Q9NX62 359 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 TSPAN2O60636 221 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 FAM20BO75063 409 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 ICOSLGO75144 302 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 JUNBP17275 347 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-202ENST00000372405 ITIH1P19827 911 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 GSTM3P21266 225 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 FPR3P25089 353 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 SLC5A2P31639 672 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 IFNGR2P38484 337 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 NUDT6P53370 316 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 CDK5Q00535 292 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 RAB39AQ14964 217 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 ACSM5Q6NUN0 579 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 TMEM205Q6UW68 189 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 NAXDQ8IW45 347 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 B3GNT7Q8NFL0 401 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 DGCR14Q96DF8 476 aaKnown RBP12.67□□□□□ -0.38
PTPRF-202ENST00000372405 PLCXD1Q9NUJ7 323 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 PPIEQ9UNP9 301 aaKnown RBP12.67□□□□□ -0.38
PTPRF-202ENST00000372405 TPRKBQ9Y3C4 175 aa12.67□□□□□ -0.38
PTPRF-202ENST00000372405 PMS2P1A4D2B8 440 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 SYNDIG1LA6NDD5 238 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 OR6C76A6NM76 312 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 RFPL3O75679 317 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 ADH7P40394 386 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 ETV5P41161 510 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 GIPRP48546 466 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 RNF4P78317 190 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 TEKQ02763 1124 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 GINS1Q14691 196 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 ZSWIM7Q19AV6 140 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 ZBED5Q49AG3 693 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 GTF2IRD2BQ6EKJ0 949 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 FAM198BQ6UWH4 519 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 KIRREL2Q6UWL6 708 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 ZNF517Q6ZMY9 492 aaPredicted RBP12.66□□□□□ -0.38
PTPRF-202ENST00000372405 C16orf47Q6ZP98 133 aaPredicted RBP12.66□□□□□ -0.38
PTPRF-202ENST00000372405 RASSF6Q6ZTQ3 369 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 RRM2BQ7LG56 351 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 SLC29A4Q7RTT9 530 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 GTF2IRD2Q86UP8 949 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 P3H2Q8IVL5 708 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 ZNF540Q8NDQ6 660 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 TMEM239Q8WW34 195 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 ZNF524Q96C55 264 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 C8orf44Q96CB5 159 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 IL4I1Q96RQ9 567 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 KLHDC3Q9BQ90 382 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 CRB3Q9BUF7 120 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 ZNF426Q9BUY5 554 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 HOXD1Q9GZZ0 328 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 TMEM27Q9HBJ8 222 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 ATP13A2Q9NQ11 1180 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 MEPEQ9NQ76 525 aaPredicted RBP12.66□□□□□ -0.38
PTPRF-202ENST00000372405 FKBP14Q9NWM8 211 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 SCN3BQ9NY72 215 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 PCNX3Q9H6A9 2034 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 OTOGLQ3ZCN5 2332 aa12.66□□□□□ -0.38
PTPRF-202ENST00000372405 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.65□□□□□ -0.38
PTPRF-202ENST00000372405 C17orf51A8MQB3 221 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms