RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 MANFP55145 182 aaKnown RBP12.27□□□□□ -0.45
VPS29-201ENST00000360579 TIMM23BQ5SRD1 257 aa12.27□□□□□ -0.45
VPS29-201ENST00000360579 ZDHHC24Q6UX98 284 aa12.27□□□□□ -0.45
VPS29-201ENST00000360579 FCRLAQ7L513 359 aa12.27□□□□□ -0.45
VPS29-201ENST00000360579 OR4C3Q8NH37 302 aa12.27□□□□□ -0.45
VPS29-201ENST00000360579 CDC26Q8NHZ8 85 aa12.27□□□□□ -0.45
VPS29-201ENST00000360579 FAM168AQ92567 244 aa12.27□□□□□ -0.45
VPS29-201ENST00000360579 PIK3R3Q92569 461 aa12.27□□□□□ -0.45
VPS29-201ENST00000360579 PROX1Q92786 737 aa12.27□□□□□ -0.45
VPS29-201ENST00000360579 IQCGQ9H095 443 aaKnown RBP12.27□□□□□ -0.45
VPS29-201ENST00000360579 ACSS3Q9H6R3 686 aa12.27□□□□□ -0.45
VPS29-201ENST00000360579 CBLN4Q9NTU7 201 aa12.27□□□□□ -0.45
VPS29-201ENST00000360579 MGAT4BQ9UQ53 548 aa12.27□□□□□ -0.45
VPS29-201ENST00000360579 GOLGA8QA0A0J9YX86 632 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 GXYLT2A0PJZ3 443 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 GOLGA8OA6NCC3 632 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 GOLGA8NF8WBI6 632 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 GOLGA8RI6L899 631 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 KIF2AO00139 706 aaPredicted RBP12.26□□□□□ -0.45
VPS29-201ENST00000360579 SCDO00767 359 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 LMX1BO60663 402 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 NKX2-2O95096 273 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 ENO1P06733 434 aaKnown RBP12.26□□□□□ -0.45
VPS29-201ENST00000360579 PRPS2P11908 318 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 BMP4P12644 408 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 TAC1P20366 129 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 HNF1AP20823 631 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 TTKP33981 857 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 SFTPDP35247 375 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 SERPINB9P50453 376 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 IRX1P78414 480 aaPredicted RBP12.26□□□□□ -0.45
VPS29-201ENST00000360579 BTKQ06187 659 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 SPDYAQ5MJ70 313 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 FAM71E1Q6IPT2 247 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 CDRT4Q8N9R6 151 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 GATSQ8NAP1 163 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 OR6Y1Q8NGX8 325 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 CEP70Q8NHQ1 597 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 B4GALNT2Q8NHY0 566 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 POC1BQ8TC44 478 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 SH3YL1Q96HL8 342 aaPredicted RBP12.26□□□□□ -0.45
VPS29-201ENST00000360579 NPAS1Q99742 590 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 DHRS9Q9BPW9 319 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 BCO1Q9HAY6 547 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 MYNNQ9NPC7 610 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 EQTNQ9NQ60 294 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 UBQLN4Q9NRR5 601 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 KLHL9Q9P2J3 617 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 KCNS2Q9ULS6 477 aa12.26□□□□□ -0.45
VPS29-201ENST00000360579 CADP27708 2225 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 A0A1W2PQD3 144 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 SERTM1A2A2V5 107 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 ZNF814B7Z6K7 855 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 H7C417 338 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 LYZL6O75951 148 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 NTN1O95631 604 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 HSPA4LO95757 839 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 LINGO3P0C6S8 592 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 IGHV4-31P0DP07 118 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 ZNF16P17020 682 aaPredicted RBP12.25□□□□□ -0.45
VPS29-201ENST00000360579 GGT1P19440 569 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 OR3A2P47893 321 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 GZMKP49863 264 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 PKNOX1P55347 436 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 ZNF678Q5SXM1 525 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 LIPNQ5VXI9 398 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 C11orf71Q6IPW1 123 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 TMEM108Q6UXF1 575 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 Q6ZSR9 355 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 IKBIPQ70UQ0 350 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 FBXL14Q8N1E6 418 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 MUC15Q8N387 334 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 ZNF525Q8N782 197 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 FAM76AQ8TAV0 307 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.25□□□□□ -0.454e-11■■■■□ 26.4
VPS29-201ENST00000360579 HOXB13Q92826 284 aaPredicted RBP12.25□□□□□ -0.45
VPS29-201ENST00000360579 SRXN1Q9BYN0 137 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 MANSC1Q9H8J5 431 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 POU2F3Q9UKI9 436 aa12.25□□□□□ -0.45
VPS29-201ENST00000360579 RGS14O43566 566 aa12.24□□□□□ -0.45
VPS29-201ENST00000360579 SBK3P0C264 359 aa12.24□□□□□ -0.45
VPS29-201ENST00000360579 DHRS4L1P0CG22 281 aa12.24□□□□□ -0.45
VPS29-201ENST00000360579 PTNP21246 168 aa12.24□□□□□ -0.45
VPS29-201ENST00000360579 USF1P22415 310 aaPredicted RBP12.24□□□□□ -0.45
VPS29-201ENST00000360579 PTAFRP25105 342 aa12.24□□□□□ -0.45
VPS29-201ENST00000360579 GPC1P35052 558 aa12.24□□□□□ -0.45
VPS29-201ENST00000360579 MAP3K8P41279 467 aa12.24□□□□□ -0.45
VPS29-201ENST00000360579 SERPINB4P48594 390 aa12.24□□□□□ -0.45
VPS29-201ENST00000360579 HTR6P50406 440 aa12.24□□□□□ -0.45
VPS29-201ENST00000360579 FOXF1Q12946 379 aa12.24□□□□□ -0.45
VPS29-201ENST00000360579 LCP2Q13094 533 aa12.24□□□□□ -0.45
VPS29-201ENST00000360579 SQLEQ14534 574 aa12.24□□□□□ -0.45
VPS29-201ENST00000360579 PRSS53Q2L4Q9 553 aa12.24□□□□□ -0.45
VPS29-201ENST00000360579 UNC50Q53HI1 259 aa12.24□□□□□ -0.45
VPS29-201ENST00000360579 ARL13AQ5H913 290 aaPredicted RBP12.24□□□□□ -0.45
VPS29-201ENST00000360579 TEX35Q5T0J7 233 aa12.24□□□□□ -0.45
VPS29-201ENST00000360579 FAM219BQ5XKK7 198 aa12.24□□□□□ -0.45
VPS29-201ENST00000360579 FAM166AQ6J272 317 aa12.24□□□□□ -0.45
VPS29-201ENST00000360579 SLC22A25Q6T423 547 aa12.24□□□□□ -0.45
VPS29-201ENST00000360579 KLHL17Q6TDP4 642 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms