RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 CLIP3Q96DZ5 547 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 NRBF2Q96F24 287 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 AURKBQ96GD4 344 aaPredicted RBP6.42□□□□□ -1.38
VPS13A-201ENST00000355766 PYURFQ96I23 114 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 C10orf90Q96M02 699 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 ZNF681Q96N22 645 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 WWC2-AS2Q96NR7 200 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 OR1F2PQ96R84 312 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 BBS4Q96RK4 519 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 NRTNQ99748 197 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 SPATA5L1Q9BVQ7 753 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 BTBD2Q9BX70 525 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 KLHL31Q9H511 634 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 EVA1AQ9H8M9 152 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 FANCEQ9HB96 536 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 C3orf14Q9HBI5 128 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 BARX1Q9HBU1 254 aaPredicted RBP6.42□□□□□ -1.38
VPS13A-201ENST00000355766 SIRT3Q9NTG7 399 aaPredicted RBP6.42□□□□□ -1.38
VPS13A-201ENST00000355766 GIN1Q9NXP7 522 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 CALML5Q9NZT1 146 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 P2RX2Q9UBL9 471 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 DNAJB9Q9UBS3 223 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 RAB26Q9ULW5 256 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 CDC14AQ9UNH5 594 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 AURKCQ9UQB9 309 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 ERVK-11Q9UQG0 969 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 LIPT1Q9Y234 373 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 ATG4BQ9Y4P1 393 aa6.42□□□□□ -1.38
VPS13A-201ENST00000355766 TRGV8A0A0C4DH27 118 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 C4orf51C9J302 202 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 C19orf84I3L1E1 186 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 CYR61O00622 381 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 PEX12O00623 359 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 PCDH17O14917 1159 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 CLOCKO15516 846 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 EMC8O43402 210 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 PLOD3O60568 738 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 KLF7O75840 302 aaPredicted RBP6.41□□□□□ -1.38
VPS13A-201ENST00000355766 RASAL1O95294 804 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 CPSF4O95639 269 aaKnown RBP6.41□□□□□ -1.38
VPS13A-201ENST00000355766 SEMG1P04279 462 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 RNH1P13489 461 aaKnown RBP6.41□□□□□ -1.38
VPS13A-201ENST00000355766 ETS2P15036 469 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 ITGA2P17301 1181 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 CPN2P22792 545 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 PEX2P28328 305 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 KDELR2P33947 212 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 AVPR1BP47901 424 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 ALDH9A1P49189 494 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 CCT3P49368 545 aaKnown RBP6.41□□□□□ -1.38
VPS13A-201ENST00000355766 PRIM2P49643 509 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 NCBP2P52298 156 aaKnown RBP eCLIP6.41□□□□□ -1.38
VPS13A-201ENST00000355766 ART1P52961 327 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 ARSFP54793 590 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 HSD17B7P56937 341 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 SESN3P58005 492 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 DSTNP60981 165 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 RAB8AP61006 207 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 IGLV3-21P80748 117 aaPredicted RBP6.41□□□□□ -1.38
VPS13A-201ENST00000355766 CDK6Q00534 326 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 TLE4Q04727 773 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 SCARB2Q14108 478 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 RFX4Q33E94 735 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 SPDYE7PQ495Y7 208 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 DEFB134Q4QY38 66 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 ZNF324BQ6AW86 544 aaPredicted RBP6.41□□□□□ -1.38
VPS13A-201ENST00000355766 FRMPD2BQ6IN97 320 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 ANKRD26P1Q6NSI1 321 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 REEP3Q6NUK4 255 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 PPP4R4Q6NUP7 873 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 ZNF585AQ6P3V2 769 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 IZUMO2Q6UXV1 221 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 PDSS2Q86YH6 399 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 ARMC8Q8IUR7 673 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 OR2L13Q8N349 312 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 BCORP1Q8N888 145 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 TTC29Q8NA56 475 aaPredicted RBP6.41□□□□□ -1.38
VPS13A-201ENST00000355766 OR4K14Q8NGD5 310 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 BBS10Q8TAM1 723 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 SUN3Q8TAQ9 357 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 NR4A3Q92570 626 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 HOXB13Q92826 284 aaPredicted RBP6.41□□□□□ -1.38
VPS13A-201ENST00000355766 EXOSC8Q96B26 276 aaKnown RBP6.41□□□□□ -1.38
VPS13A-201ENST00000355766 PPWD1Q96BP3 646 aaKnown RBP6.41□□□□□ -1.38
VPS13A-201ENST00000355766 SDCCAG3Q96C92 435 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 CNRIP1Q96F85 164 aaPredicted RBP6.41□□□□□ -1.38
VPS13A-201ENST00000355766 SLC47A1Q96FL8 570 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 ZNF597Q96LX8 424 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 MS4A4EQ96PG1 132 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 SORCS2Q96PQ0 1159 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 NR1H4Q96RI1 486 aaPredicted RBP6.41□□□□□ -1.38
VPS13A-201ENST00000355766 ZNF347Q96SE7 839 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 DOHHQ9BU89 302 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 CHID1Q9BWS9 393 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 SORBS1Q9BX66 1292 aaKnown RBP6.41□□□□□ -1.38
VPS13A-201ENST00000355766 OSBPL11Q9BXB4 747 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 GABARAPL1Q9H0R8 117 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 GLIPR2Q9H4G4 154 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 CXorf36Q9H7Y0 433 aa6.41□□□□□ -1.38
VPS13A-201ENST00000355766 TRIM45Q9H8W5 580 aaPredicted RBP6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms