RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 PRORSD1PA6NEY8 169 aa20.15■□□□□ 0.82
SHMT1-203ENST00000354098 ZNF264O43296 627 aa20.15■□□□□ 0.82
SHMT1-203ENST00000354098 CYP7B1O75881 506 aa20.15■□□□□ 0.82
SHMT1-203ENST00000354098 NID1P14543 1247 aa20.15■□□□□ 0.82
SHMT1-203ENST00000354098 TLE1Q04724 770 aa20.15■□□□□ 0.82
SHMT1-203ENST00000354098 ZNF311Q5JNZ3 666 aa20.15■□□□□ 0.82
SHMT1-203ENST00000354098 MRPL2Q5T653 305 aaKnown RBP20.15■□□□□ 0.82
SHMT1-203ENST00000354098 ERICH5Q6P6B1 374 aa20.15■□□□□ 0.82
SHMT1-203ENST00000354098 B4GALNT2Q8NHY0 566 aa20.15■□□□□ 0.82
SHMT1-203ENST00000354098 CNOT9Q92600 299 aaKnown RBP20.15■□□□□ 0.82
SHMT1-203ENST00000354098 ICAM5Q9UMF0 924 aa20.15■□□□□ 0.82
SHMT1-203ENST00000354098 M0QX08 132 aa20.14■□□□□ 0.81
SHMT1-203ENST00000354098 ZNHIT1O43257 154 aa20.14■□□□□ 0.81
SHMT1-203ENST00000354098 CDC40O60508 579 aaKnown RBP eCLIP20.14■□□□□ 0.81
SHMT1-203ENST00000354098 OPN1SWP03999 348 aa20.14■□□□□ 0.81
SHMT1-203ENST00000354098 EEF1A1P68104 462 aaKnown RBP20.14■□□□□ 0.81
SHMT1-203ENST00000354098 HSF1Q00613 529 aa20.14■□□□□ 0.81
SHMT1-203ENST00000354098 BNIP1Q12981 228 aa20.14■□□□□ 0.81
SHMT1-203ENST00000354098 SKP2Q13309 424 aa20.14■□□□□ 0.81
SHMT1-203ENST00000354098 VEZF1Q14119 521 aa20.14■□□□□ 0.81
SHMT1-203ENST00000354098 SLC10A1Q14973 349 aa20.14■□□□□ 0.81
SHMT1-203ENST00000354098 KRT73Q86Y46 540 aa20.14■□□□□ 0.81
SHMT1-203ENST00000354098 CLIP4Q8N3C7 705 aa20.14■□□□□ 0.81
SHMT1-203ENST00000354098 FAM156AQ8NDB6 213 aa20.14■□□□□ 0.81
SHMT1-203ENST00000354098 ZNF607Q96SK3 696 aa20.14■□□□□ 0.81
SHMT1-203ENST00000354098 SLC35A3Q9Y2D2 325 aa20.14■□□□□ 0.81
SHMT1-203ENST00000354098 TPST1O60507 370 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 HPNP05981 417 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 THBS1P07996 1170 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 TCEA1P23193 301 aaKnown RBP20.13■□□□□ 0.81
SHMT1-203ENST00000354098 DPP4P27487 766 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 CRYBA2P53672 197 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 FOXK1P85037 733 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 DMTNQ08495 405 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 LARS2Q15031 903 aaKnown RBP20.13■□□□□ 0.81
SHMT1-203ENST00000354098 LIN52Q52LA3 116 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 EIPR1Q53HC9 387 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 ARSKQ6UWY0 536 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 YRDCQ86U90 279 aaKnown RBP20.13■□□□□ 0.81
SHMT1-203ENST00000354098 SLC30A8Q8IWU4 369 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 FAM71CQ8NEG0 241 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 FAM83FQ8NEG4 500 aaPredicted RBP20.13■□□□□ 0.81
SHMT1-203ENST00000354098 ZNF524Q96C55 264 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 SLC7A6OSQ96CW6 309 aaPredicted RBP20.13■□□□□ 0.81
SHMT1-203ENST00000354098 GPR137Q96N19 417 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 KCTD14Q9BQ13 255 aaPredicted RBP20.13■□□□□ 0.81
SHMT1-203ENST00000354098 LAT2Q9GZY6 243 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 QPCTLQ9NXS2 382 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 ZNF232Q9UNY5 417 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 IFT52Q9Y366 437 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 ZIC3O60481 467 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 EIF4E2O60573 245 aaKnown RBP20.13■□□□□ 0.81
SHMT1-203ENST00000354098 ADAM11O75078 769 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 MFN2O95140 757 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 TCN1P20061 433 aaPredicted RBP20.13■□□□□ 0.81
SHMT1-203ENST00000354098 ENDOUP21128 410 aaKnown RBP20.13■□□□□ 0.81
SHMT1-203ENST00000354098 MSX1P28360 303 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 P2RX1P51575 399 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 DSCR4P56555 118 aaPredicted RBP20.13■□□□□ 0.81
SHMT1-203ENST00000354098 GLIPR1L2Q4G1C9 344 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 WIPI1Q5MNZ9 446 aaPredicted RBP20.13■□□□□ 0.81
SHMT1-203ENST00000354098 INTS11Q5TA45 600 aaKnown RBP20.13■□□□□ 0.81
SHMT1-203ENST00000354098 CCDC80Q76M96 950 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 COMTD1Q86VU5 262 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 CMIPQ8IY22 773 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 TMCO5AQ8N6Q1 288 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 SMYD1Q8NB12 490 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 C1GALT1C1Q96EU7 318 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 C1orf21Q9H246 121 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 SLC6A15Q9H2J7 730 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 PTGES2Q9H7Z7 377 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 DNAJB12Q9NXW2 375 aaKnown RBP20.13■□□□□ 0.81
SHMT1-203ENST00000354098 SEC14L3Q9UDX4 400 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 CD300AQ9UGN4 299 aa20.13■□□□□ 0.81
SHMT1-203ENST00000354098 PCNX3Q9H6A9 2034 aa20.12■□□□□ 0.81
SHMT1-203ENST00000354098 CDHR4A6H8M9 788 aa20.12■□□□□ 0.81
SHMT1-203ENST00000354098 SERPINB7O75635 380 aa20.12■□□□□ 0.81
SHMT1-203ENST00000354098 EPPINO95925 133 aa20.12■□□□□ 0.81
SHMT1-203ENST00000354098 SRD5A2P31213 254 aa20.12■□□□□ 0.81
SHMT1-203ENST00000354098 MSX2P35548 267 aaPredicted RBP20.12■□□□□ 0.81
SHMT1-203ENST00000354098 CCR4P51679 360 aa20.12■□□□□ 0.81
SHMT1-203ENST00000354098 IGFBP7Q16270 282 aa20.12■□□□□ 0.81
SHMT1-203ENST00000354098 BNC2Q6ZN30 1099 aaPredicted RBP20.12■□□□□ 0.81
SHMT1-203ENST00000354098 PATL1Q86TB9 770 aaKnown RBP20.12■□□□□ 0.81
SHMT1-203ENST00000354098 SPPL2CQ8IUH8 684 aa20.12■□□□□ 0.81
SHMT1-203ENST00000354098 ARMC8Q8IUR7 673 aa20.12■□□□□ 0.81
SHMT1-203ENST00000354098 TAMM41Q96BW9 452 aa20.12■□□□□ 0.81
SHMT1-203ENST00000354098 SPATA5L1Q9BVQ7 753 aa20.12■□□□□ 0.81
SHMT1-203ENST00000354098 CACYBPQ9HB71 228 aaKnown RBP20.12■□□□□ 0.81
SHMT1-203ENST00000354098 ACKR4Q9NPB9 350 aa20.12■□□□□ 0.81
SHMT1-203ENST00000354098 TAS2R10Q9NYW0 307 aa20.12■□□□□ 0.81
SHMT1-203ENST00000354098 ZKSCAN7Q9P0L1 754 aaPredicted RBP20.12■□□□□ 0.81
SHMT1-203ENST00000354098 DKKL1Q9UK85 242 aa20.12■□□□□ 0.81
SHMT1-203ENST00000354098 VDAC3Q9Y277 283 aa20.12■□□□□ 0.81
SHMT1-203ENST00000354098 RPH3AQ9Y2J0 694 aaPredicted RBP20.12■□□□□ 0.81
SHMT1-203ENST00000354098 C19orf57Q0VDD7 668 aa20.11■□□□□ 0.81
SHMT1-203ENST00000354098 CEACAM7Q14002 265 aa20.11■□□□□ 0.81
SHMT1-203ENST00000354098 TOMM34Q15785 309 aaPredicted RBP20.11■□□□□ 0.81
SHMT1-203ENST00000354098 SAMD4BQ5PRF9 694 aaKnown RBP20.11■□□□□ 0.81
SHMT1-203ENST00000354098 RNF220Q5VTB9 566 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms