RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ALPIP09923 528 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 H2BFMP0C1H6 154 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 PNMTP11086 282 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 LRIT3Q3SXY7 679 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 TMIGD1Q6UXZ0 262 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 GCNT2Q8N0V5 402 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 ARRDC4Q8NCT1 418 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 BCL7CQ8WUZ0 217 aaPredicted RBP11.92□□□□□ -0.5
COL6A3-203ENST00000353578 UTP4Q969X6 686 aaKnown RBP11.92□□□□□ -0.5
COL6A3-203ENST00000353578 TK1P04183 234 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 SLAIN1Q8ND83 568 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 SLC2A12Q8TD20 617 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 RASD1Q9Y272 281 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 A0A1W2PPV4 95 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 ADIRFQ15847 76 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 FIGNL1Q6PIW4 674 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 C11orf54Q9H0W9 315 aaPredicted RBP11.92□□□□□ -0.5
COL6A3-203ENST00000353578 LSM5Q9Y4Y9 91 aaKnown RBP11.92□□□□□ -0.5
COL6A3-203ENST00000353578 PLEKHH3Q7Z736 793 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 SPATC1LQ9H0A9 340 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 ZNF281Q9Y2X9 895 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 SLC35E2BP0CK96 405 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 CNR2P34972 360 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.92□□□□□ -0.5
COL6A3-203ENST00000353578 LSMEM2Q8N112 164 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 OR5D14Q8NGL3 314 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 OR6F1Q8NGZ6 308 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 EMC8O43402 210 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 PIRTP0C851 137 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 CD1DP15813 335 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 GNB3P16520 340 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 GZMKP49863 264 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 GP2P55259 537 aaKnown RBP11.92□□□□□ -0.5
COL6A3-203ENST00000353578 HMGCS1Q01581 520 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 IL17RDQ8NFM7 739 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 SARDHQ9UL12 918 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 C4AP0C0L4 1744 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 C4BP0C0L5 1744 aa11.92□□□□□ -0.5
COL6A3-203ENST00000353578 A6NIZ1 184 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 ANKRD28O15084 1053 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 GBAP04062 536 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 RAP1BP61224 184 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 DSC2Q02487 901 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 C17orf107Q6ZR85 190 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 CDKN2AIPNLQ96HQ2 116 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 ALOXE3Q9BYJ1 711 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 ACSS1Q9NUB1 689 aaPredicted RBP11.91□□□□□ -0.5
COL6A3-203ENST00000353578 SPO11Q9Y5K1 396 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 KNDC1Q76NI1 1749 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 LOC105369274A0A096LPK9 316 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 OR2A25A4D2G3 310 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 TSPAN12O95859 305 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 CLDN20P56880 219 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 AAK1Q2M2I8 961 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 OR4N4Q8N0Y3 316 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 KDF1Q8NAX2 398 aaPredicted RBP11.91□□□□□ -0.5
COL6A3-203ENST00000353578 MYADMQ96S97 322 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 EPHA4P54764 986 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 FLYWCH1Q4VC44 716 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 CELF3Q5SZQ8 465 aaKnown RBP11.91□□□□□ -0.5
COL6A3-203ENST00000353578 BTNL8Q6UX41 500 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 ZNF681Q96N22 645 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 TMEM43Q9BTV4 400 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 NRIP3Q9NQ35 241 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 TMEM235A6NFC5 223 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 MT-ND4P03905 459 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 TAF9BQ9HBM6 251 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 IL21RQ9HBE5 538 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 FTCDNL1E5RQL4 147 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 H7BYZ3 331 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 CAPNS1P04632 268 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 LPLP06858 475 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 SLC46A3Q7Z3Q1 461 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 LRRN4Q8WUT4 740 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 EXTL1Q92935 676 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 SCLYQ96I15 445 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 PRRC1Q96M27 445 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 CCNL2Q96S94 520 aaPredicted RBP11.91□□□□□ -0.5
COL6A3-203ENST00000353578 FAM83CQ9BQN1 747 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 EDEM2Q9BV94 578 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 TRAPPC4Q9Y296 219 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 PCDHGA6Q9Y5G7 932 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 EEF1A1P68104 462 aaKnown RBP11.91□□□□□ -0.5
COL6A3-203ENST00000353578 EEF1A2Q05639 463 aaKnown RBP11.91□□□□□ -0.5
COL6A3-203ENST00000353578 PCBP2Q15366 365 aaKnown RBP eCLIP11.91□□□□□ -0.5
COL6A3-203ENST00000353578 EEF1A1P5Q5VTE0 462 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 OR6M1Q8NGM8 313 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 DPF1Q92782 380 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 CLIP3Q96DZ5 547 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 SLC25A44Q96H78 314 aaPredicted RBP11.91□□□□□ -0.5
COL6A3-203ENST00000353578 B4GAT1O43505 415 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 OPN1SWP03999 348 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 BDH1Q02338 343 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 CLEC10AQ8IUN9 316 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 FRMD1Q8N878 549 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 NETO1Q8TDF5 533 aa11.91□□□□□ -0.5
COL6A3-203ENST00000353578 NOL4LQ96MY1 436 aaPredicted RBP11.91□□□□□ -0.5
COL6A3-203ENST00000353578 GBA2Q9HCG7 927 aaPredicted RBP11.91□□□□□ -0.5
COL6A3-203ENST00000353578 TACR2P21452 398 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 HTR3AP46098 478 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms