RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 CHI3L1P36222 383 aaPredicted RBP13.9□□□□□ -0.18
VAPA-201ENST00000340541 KHKP50053 298 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 ZNF117Q03924 483 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 SRYQ05066 204 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 ZNF141Q15928 474 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 BCL2A1Q16548 175 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 RAET1LQ5VY80 246 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 POMZP3Q6PJE2 187 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 CBLN3Q6UW01 205 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 DNAJC14Q6Y2X3 702 aaPredicted RBP13.9□□□□□ -0.18
VAPA-201ENST00000340541 ZNF621Q6ZSS3 439 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 MTERF4Q7Z6M4 381 aaKnown RBP13.9□□□□□ -0.18
VAPA-201ENST00000340541 TRIML2Q8N7C3 387 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 OR10Q1Q8NGQ4 319 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 RFWD2Q8NHY2 731 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 MBD3L2Q8NHZ7 208 aaPredicted RBP13.9□□□□□ -0.18
VAPA-201ENST00000340541 ZFP90Q8TF47 636 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 XAGE5Q8WWM1 108 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 THOC1Q96FV9 657 aaKnown RBP13.9□□□□□ -0.18
VAPA-201ENST00000340541 SH3YL1Q96HL8 342 aaPredicted RBP13.9□□□□□ -0.18
VAPA-201ENST00000340541 UCN2Q96RP3 112 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 TRIB1Q96RU8 372 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 SAP130Q9H0E3 1048 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 HHATLQ9HCP6 504 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 NPDC1Q9NQX5 325 aaPredicted RBP13.9□□□□□ -0.18
VAPA-201ENST00000340541 EXD2Q9NVH0 621 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 ICAM5Q9UMF0 924 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 ZNF337Q9Y3M9 751 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 DTNAQ9Y4J8 743 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 HEATR5AQ86XA9 2040 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 INTS1Q8N201 2190 aaKnown RBP13.89□□□□□ -0.19
VAPA-201ENST00000340541 NKX2-6A6NCS4 301 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 FAM90A27PA6NNH2 459 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 H0Y3Z8 333 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 HCRTR2O43614 444 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 KIAA0513O60268 411 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 TNFRSF21O75509 655 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 UGT2B17O75795 530 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 AGR2O95994 175 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 HOXB9P17482 250 aaPredicted RBP13.89□□□□□ -0.19
VAPA-201ENST00000340541 RCAN2Q14206 197 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 GPR68Q15743 365 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 PLPPR5Q32ZL2 321 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 NDUFAF6Q330K2 333 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 GTDC1Q4AE62 458 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 COX20Q5RI15 118 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 PDZK1Q5T2W1 519 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 TYW3Q6IPR3 259 aaKnown RBP13.89□□□□□ -0.19
VAPA-201ENST00000340541 BLOC1S3Q6QNY0 202 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 PLXDC2Q6UX71 529 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 C16orf62Q7Z3J2 963 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 MED12LQ86YW9 2145 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 ZNF527Q8NB42 609 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 B4GALNT2Q8NHY0 566 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 PHOSPHO1Q8TCT1 267 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 GTF2H4Q92759 462 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 ZNF524Q96C55 264 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 ROPN1LQ96C74 230 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 ZNF559Q9BR84 538 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 ZNF385DQ9H6B1 395 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 CALHM2Q9HA72 323 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 MED17Q9NVC6 651 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 CLCF1Q9UBD9 225 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 MKLN1Q9UL63 735 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 VDAC3Q9Y277 283 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 AKAP9Q99996 3911 aa13.89□□□□□ -0.19
VAPA-201ENST00000340541 MED13LQ71F56 2210 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 A0A087WZY1 265 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 C7orf72A4D263 438 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 CLCA1A8K7I4 914 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 H0YC42 278 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 LINC01387J3KSC0 135 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 LINGO3P0C6S8 592 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 PEPDP12955 493 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 ZNF17P17021 662 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 ATP4BP51164 291 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 ZNF136P52737 540 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 SUCLG1P53597 346 aaKnown RBP13.88□□□□□ -0.19
VAPA-201ENST00000340541 TPD52P55327 224 aaPredicted RBP13.88□□□□□ -0.19
VAPA-201ENST00000340541 STX1BP61266 288 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 SF3B4Q15427 424 aaKnown RBP eCLIP13.88□□□□□ -0.196e-8■■□□□ 12.7
VAPA-201ENST00000340541 MAPK11Q15759 364 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 MAPK14Q16539 360 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 ATAD3BQ5T9A4 648 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 SLC2A7Q6PXP3 512 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 FRRS1Q6ZNA5 592 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 GTPBP8Q8N3Z3 284 aaPredicted RBP13.88□□□□□ -0.19
VAPA-201ENST00000340541 C9orf106Q8NAJ2 232 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 POC1BQ8TC44 478 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 PNPT1Q8TCS8 783 aaKnown RBP13.88□□□□□ -0.19
VAPA-201ENST00000340541 ZG16BQ96DA0 208 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 ITCHQ96J02 903 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 PIGQQ9BRB3 760 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 PAIP1Q9H074 479 aaKnown RBP13.88□□□□□ -0.19
VAPA-201ENST00000340541 RMND5AQ9H871 391 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 NPHS2Q9NP85 383 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 POLE3Q9NRF9 147 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 CARD8Q9Y2G2 431 aa13.88□□□□□ -0.19
VAPA-201ENST00000340541 SERINC4A6NH21 518 aa13.87□□□□□ -0.19
VAPA-201ENST00000340541 HSPB2A8KAH6 182 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms