RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 ZNF593O00488 134 aaPredicted RBP12.82□□□□□ -0.36
SYNE3-201ENST00000334258 NDUFS6O75380 124 aaKnown RBP12.82□□□□□ -0.36
SYNE3-201ENST00000334258 PROS1P07225 676 aa12.82□□□□□ -0.36
SYNE3-201ENST00000334258 MRPL3P09001 348 aaKnown RBP12.82□□□□□ -0.36
SYNE3-201ENST00000334258 GCGRP47871 477 aa12.82□□□□□ -0.36
SYNE3-201ENST00000334258 STXBP1P61764 594 aaKnown RBP12.82□□□□□ -0.36
SYNE3-201ENST00000334258 ST3GAL3Q11203 375 aa12.82□□□□□ -0.36
SYNE3-201ENST00000334258 PGGHGQ32M88 737 aa12.82□□□□□ -0.36
SYNE3-201ENST00000334258 FAM109BQ6ICB4 259 aaPredicted RBP12.82□□□□□ -0.36
SYNE3-201ENST00000334258 NLRC3Q7RTR2 1065 aa12.82□□□□□ -0.36
SYNE3-201ENST00000334258 OR56B4Q8NH76 319 aa12.82□□□□□ -0.36
SYNE3-201ENST00000334258 MOSPD2Q8NHP6 518 aa12.82□□□□□ -0.36
SYNE3-201ENST00000334258 YIPF5Q969M3 257 aa12.82□□□□□ -0.36
SYNE3-201ENST00000334258 SAMD8Q96LT4 415 aa12.82□□□□□ -0.36
SYNE3-201ENST00000334258 SGPP1Q9BX95 441 aa12.82□□□□□ -0.36
SYNE3-201ENST00000334258 CPEB1Q9BZB8 566 aaKnown RBP12.82□□□□□ -0.36
SYNE3-201ENST00000334258 OR10A4Q9H209 315 aa12.82□□□□□ -0.36
SYNE3-201ENST00000334258 OR51V1Q9H2C8 321 aa12.82□□□□□ -0.36
SYNE3-201ENST00000334258 LRRN3Q9H3W5 708 aa12.82□□□□□ -0.36
SYNE3-201ENST00000334258 ZDHHC4Q9NPG8 344 aa12.82□□□□□ -0.36
SYNE3-201ENST00000334258 SEMA4GQ9NTN9 838 aa12.82□□□□□ -0.36
SYNE3-201ENST00000334258 DCAF16Q9NXF7 216 aa12.82□□□□□ -0.36
SYNE3-201ENST00000334258 BAIAP2Q9UQB8 552 aa12.82□□□□□ -0.36
SYNE3-201ENST00000334258 NTNG1Q9Y2I2 539 aa12.82□□□□□ -0.36
SYNE3-201ENST00000334258 STON1Q9Y6Q2 735 aa12.82□□□□□ -0.36
SYNE3-201ENST00000334258 TRAV20A0A0B4J274 112 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 TRABD2BA6NFA1 517 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 J3QLW9 94 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 MID1O15344 667 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 GREM1O60565 184 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 LEFTY1O75610 366 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 STATHP02808 62 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 ZNF19P17023 458 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 EPHB3P54753 998 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 Q6ZNB5 142 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 C17orf64Q86WR6 236 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 NKAIN4Q8IVV8 208 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 LRRC56Q8IYG6 542 aaPredicted RBP12.81□□□□□ -0.36
SYNE3-201ENST00000334258 OR2T33Q8NG76 320 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 SGTBQ96EQ0 304 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 CAMK1GQ96NX5 476 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 MTG2Q9H4K7 406 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 TAC3Q9UHF0 121 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 LIPT1Q9Y234 373 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 CACNB4O00305 520 aaPredicted RBP12.81□□□□□ -0.36
SYNE3-201ENST00000334258 GATBO75879 557 aaKnown RBP12.81□□□□□ -0.36
SYNE3-201ENST00000334258 EPPINO95925 133 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 TIMP1P01033 207 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 ANKRD34CP0C6C1 535 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 ELFN1P0C7U0 828 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 RGS8P57771 180 aaPredicted RBP12.81□□□□□ -0.36
SYNE3-201ENST00000334258 PITPNAQ00169 270 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 HENMT1Q5T8I9 393 aaKnown RBP12.81□□□□□ -0.36
SYNE3-201ENST00000334258 BTN2A1Q7KYR7 527 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 FGD2Q7Z6J4 655 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 TMEM99Q8N816 258 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 BBS10Q8TAM1 723 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 TTTY10Q9BZA0 68 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 HS3ST2Q9Y278 367 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 F5P12259 2224 aa12.81□□□□□ -0.36
SYNE3-201ENST00000334258 E9PI62 339 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 LGALS8O00214 317 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 KHNYNO15037 678 aaKnown RBP12.8□□□□□ -0.36
SYNE3-201ENST00000334258 TMPRSS11DO60235 418 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 WNT1P04628 370 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 C8AP07357 584 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 TBXA2RP21731 343 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 KHKP50053 298 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 KIAA1024LP59773 190 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 COL9A2Q14055 689 aaPredicted RBP12.8□□□□□ -0.36
SYNE3-201ENST00000334258 SLC25A25Q6KCM7 469 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 RPTNQ6XPR3 784 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 VRK2Q86Y07 508 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 OR2T4Q8NH00 348 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 SUN3Q8TAQ9 357 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 GANCQ8TET4 914 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 HMGB4Q8WW32 186 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 ZNF689Q96CS4 500 aaPredicted RBP12.8□□□□□ -0.36
SYNE3-201ENST00000334258 ZG16BQ96DA0 208 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 WDR34Q96EX3 536 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 RADILQ96JH8 1075 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 NRTNQ99748 197 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 ZNF175Q9Y473 711 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 COL4A6Q14031 1691 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 H7BY64 318 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 PRKRAO75569 313 aaKnown RBP12.8□□□□□ -0.36
SYNE3-201ENST00000334258 PPM1BO75688 479 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 HMGN1P05114 100 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 HMGN2P05204 90 aaKnown RBP12.8□□□□□ -0.36
SYNE3-201ENST00000334258 RAB3BP20337 219 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 THBS2P35442 1172 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 CCR2P41597 374 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 E2F1Q01094 437 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 SLITRK4Q8IW52 837 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 ABHD4Q8TB40 342 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 SMAP2Q8WU79 429 aaPredicted RBP12.8□□□□□ -0.36
SYNE3-201ENST00000334258 PPP1R16AQ96I34 528 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 PRAP1Q96NZ9 151 aa12.8□□□□□ -0.36
SYNE3-201ENST00000334258 TRMT61BQ9BVS5 477 aaKnown RBP12.8□□□□□ -0.36
SYNE3-201ENST00000334258 FAIM2Q9BWQ8 316 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms