RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 KRT13P13646 458 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 PRG2P13727 222 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 UQCRBP14927 111 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 H2AFXP16104 143 aaPredicted RBP2.5□□□□□ -2.01
HMGB1-201ENST00000326004 TSPAN8P19075 237 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 FASP25445 335 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 AXLP30530 894 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 ACVR1BP36896 505 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 MDH2P40926 338 aaKnown RBP2.5□□□□□ -2.01
HMGB1-201ENST00000326004 MEOX2P50222 304 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 CXCL6P80162 114 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 MAP2K1Q02750 393 aaPredicted RBP2.5□□□□□ -2.01
HMGB1-201ENST00000326004 PUDPQ08623 228 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 PDZK1IP1Q13113 114 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 IL18R1Q13478 541 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 EXOSC2Q13868 293 aaKnown RBP2.5□□□□□ -2.01
HMGB1-201ENST00000326004 TGIF1Q15583 401 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 UBE2V2Q15819 145 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 CDKN3Q16667 212 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 GSG1Q2KHT4 349 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 MAJINQ3KP22 176 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 CEP55Q53EZ4 464 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 DCST2Q5T1A1 773 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 LRRC8BQ6P9F7 803 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 CASC1Q6TDU7 716 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 ARSKQ6UWY0 536 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 LPCAT2Q7L5N7 544 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 ZNF525Q8N782 197 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 SLC5A11Q8WWX8 675 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 SELENOMQ8WWX9 145 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 THRSPQ92748 146 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 FEM1AQ9BSK4 669 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 FICDQ9BVA6 458 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 TBC1D10AQ9BXI6 508 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 PALMDQ9NP74 551 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 YAE1D1Q9NRH1 226 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 C1orf123Q9NWV4 160 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 EHFQ9NZC4 300 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 ATXN10Q9UBB4 475 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 ATP6V1HQ9UI12 483 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 EHBP1L1Q8N3D4 1523 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 GPATCH8Q9UKJ3 1502 aaKnown RBP2.5□□□□□ -2.01
HMGB1-201ENST00000326004 NUP153P49790 1475 aaKnown RBP2.5□□□□□ -2.01
HMGB1-201ENST00000326004 USP6P35125 1406 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 COL22A1Q8NFW1 1626 aaPredicted RBP2.5□□□□□ -2.01
HMGB1-201ENST00000326004 CICQ96RK0 1608 aaPredicted RBP2.5□□□□□ -2.01
HMGB1-201ENST00000326004 TNRC18O15417 2968 aaPredicted RBP2.49□□□□□ -2.01
HMGB1-201ENST00000326004 PCNTO95613 3336 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 GPR89AB7ZAQ6 455 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 PPIHO43447 177 aaKnown RBP2.49□□□□□ -2.01
HMGB1-201ENST00000326004 LANCL1O43813 399 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 VPS26AO75436 327 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 SNX4O95219 450 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 JCHAINP01591 159 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 KRT6BP04259 564 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 GPR89BP0CG08 455 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 GSTT2P0CG29 244 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 GSTT2BP0CG30 244 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 SLC35E2P0CK97 266 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 THRBP10828 461 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 PDHBP11177 359 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 RPS2P15880 293 aaKnown RBP2.49□□□□□ -2.01
HMGB1-201ENST00000326004 IDSP22304 550 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 IGHV1-2P23083 117 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 GDF1P27539 372 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 PRKAR2BP31323 418 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 SOX6P35712 828 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 KRT6CP48668 564 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 NOVP48745 357 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 TRPC1P48995 793 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 NAPAP54920 295 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 MTTPP55157 894 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 ACTR1AP61163 376 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 OSTNP61366 133 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 LRRC74AQ0VAA2 488 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 OVGP1Q12889 678 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 ASAH1Q13510 395 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 SERTAD2Q14140 314 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 TFDP1Q14186 410 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 CYP51A1Q16850 503 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 QRICH1Q2TAL8 776 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 ADPRMQ3LIE5 342 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 DCAF4L1Q3SXM0 396 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 KRT71Q3SY84 523 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 PAN3Q58A45 887 aaKnown RBP2.49□□□□□ -2.01
HMGB1-201ENST00000326004 LCE3CQ5T5A8 94 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 METTL11BQ5VVY1 283 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 SLX4IPQ5VYV7 408 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 SLC22A10Q63ZE4 541 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 Q7L0L9 218 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 GPR137CQ8N3F9 429 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 FBXL16Q8N461 479 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 SHC3Q92529 594 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 UPRTQ96BW1 309 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 VSTM2LQ96N03 204 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 CASD1Q96PB1 797 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 DPH7Q9BTV6 452 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 TBCDQ9BTW9 1192 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 NFKBIZQ9BYH8 718 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 DEFB126Q9BYW3 111 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms