RNA–Protein interactions for RNA: ENST00000314289.12

RNF4-201, Transcript of ring finger protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF4, Length 3,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-201ENST00000314289 ENKD1Q9H0I2 346 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 COLQQ9Y215 455 aaPredicted RBP11.51□□□□□ -0.57
RNF4-201ENST00000314289 KLK4Q9Y5K2 254 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 PEX16Q9Y5Y5 336 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 HEATR5AQ86XA9 2040 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 HYKKA2RU49 373 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 KIAA0513O60268 411 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 MPZL2O60487 215 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 IGKV1D-16P01601 117 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 DAB2P98082 770 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 FAM53BQ14153 422 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 FLYWCH1Q4VC44 716 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 SLC35F1Q5T1Q4 408 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 PRAMEF8Q5VWM4 474 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 PRAMEF7Q5VXH5 474 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 FCRLBQ6BAA4 426 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 ZNF544Q6NX49 715 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 ARHGEF39Q8N4T4 335 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 ASCC1Q8N9N2 400 aaKnown RBP11.51□□□□□ -0.57
RNF4-201ENST00000314289 PIGXQ8TBF5 258 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 CNOT9Q92600 299 aaKnown RBP11.51□□□□□ -0.57
RNF4-201ENST00000314289 TMEM203Q969S6 136 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 NACC2Q96BF6 587 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 PLSCR3Q9NRY6 295 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 DHCR7Q9UBM7 475 aaKnown RBP11.51□□□□□ -0.57
RNF4-201ENST00000314289 CSNK1G3Q9Y6M4 447 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 SH3D21A4FU49 640 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 FAM172BPA6NC97 362 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.51□□□□□ -0.57
RNF4-201ENST00000314289 ARHGAP33O14559 1287 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 SLITRK5O94991 958 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 SOX6P35712 828 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 SNRPGP62308 76 aaKnown RBP11.51□□□□□ -0.57
RNF4-201ENST00000314289 POU6F2P78424 691 aaPredicted RBP11.51□□□□□ -0.57
RNF4-201ENST00000314289 MADCAM1Q13477 382 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 KRR1Q13601 381 aaKnown RBP11.51□□□□□ -0.57
RNF4-201ENST00000314289 IRF3Q14653 427 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 CLPPQ16740 277 aaPredicted RBP11.51□□□□□ -0.57
RNF4-201ENST00000314289 OR2G6Q5TZ20 316 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 SLC27A4Q6P1M0 643 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 BBS1Q8NFJ9 593 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 OR4Q3Q8NH05 313 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 ZNF582Q96NG8 517 aaPredicted RBP11.51□□□□□ -0.57
RNF4-201ENST00000314289 PRO3102Q9H379 93 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 LRIT1Q9P2V4 623 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 ERVK-19Q9WJR5 959 aa11.51□□□□□ -0.57
RNF4-201ENST00000314289 RHPN2P1A8MT19 583 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 CSO75390 466 aaKnown RBP11.5□□□□□ -0.57
RNF4-201ENST00000314289 IFNA8P32881 189 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 HTR3AP46098 478 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 FASLGP48023 281 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 EMDP50402 254 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 SMSP52788 366 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 CDK5Q00535 292 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 CSTF1Q05048 431 aaKnown RBP11.5□□□□□ -0.57
RNF4-201ENST00000314289 COX10Q12887 443 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 CAMK2BQ13554 666 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 OR1Q1Q15612 314 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 TAB1Q15750 504 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 SSX1Q16384 188 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 PRTGQ2VWP7 1150 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 TTLL10Q6ZVT0 673 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 ACOT11Q8WXI4 607 aaPredicted RBP11.5□□□□□ -0.57
RNF4-201ENST00000314289 CTHRC1Q96CG8 243 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 MSANTD3Q96H12 275 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 SAMD8Q96LT4 415 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 TMEM246Q9BRR3 403 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 FSCN3Q9NQT6 498 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 CELSR3Q9NYQ7 3312 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 ZC3H12DA2A288 527 aaKnown RBP11.5□□□□□ -0.57
RNF4-201ENST00000314289 CENPXA8MT69 81 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 GMFGO60234 142 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 HBQ1P09105 142 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 SLC35E2P0CK97 266 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 RNH1P13489 461 aaKnown RBP11.5□□□□□ -0.57
RNF4-201ENST00000314289 S1PR1P21453 382 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 CD79BP40259 229 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 ETV5P41161 510 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 ETV1P50549 477 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 TSPAN31Q12999 210 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 GATSQ8NAP1 163 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 GNPDA2Q8TDQ7 276 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 TMEM80Q96HE8 168 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 SDHCQ99643 169 aaPredicted RBP11.5□□□□□ -0.57
RNF4-201ENST00000314289 CDCA4Q9BXL8 241 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 BEX2Q9BXY8 128 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 TRIM45Q9H8W5 580 aaPredicted RBP11.5□□□□□ -0.57
RNF4-201ENST00000314289 PRTFDC1Q9NRG1 225 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 PAQR5Q9NXK6 330 aaPredicted RBP11.5□□□□□ -0.57
RNF4-201ENST00000314289 CCDC59Q9P031 241 aaKnown RBP11.5□□□□□ -0.57
RNF4-201ENST00000314289 RNF215Q9Y6U7 377 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 CACNA1EQ15878 2313 aa11.5□□□□□ -0.57
RNF4-201ENST00000314289 SMIM30A4D0T7 59 aa11.49□□□□□ -0.57
RNF4-201ENST00000314289 CDHR4A6H8M9 788 aa11.49□□□□□ -0.57
RNF4-201ENST00000314289 MRPS14O60783 128 aaKnown RBP11.49□□□□□ -0.57
RNF4-201ENST00000314289 AGR2O95994 175 aa11.49□□□□□ -0.57
RNF4-201ENST00000314289 NID1P14543 1247 aa11.49□□□□□ -0.57
RNF4-201ENST00000314289 FNTBP49356 437 aa11.49□□□□□ -0.57
RNF4-201ENST00000314289 BNC1Q01954 994 aa11.49□□□□□ -0.57
RNF4-201ENST00000314289 LIPKQ5VXJ0 399 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms