RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 PRDM9Q9NQV7 894 aa12.08□□□□□ -0.48
COL3A1-201ENST00000304636 ACSS1Q9NUB1 689 aaPredicted RBP12.08□□□□□ -0.48
COL3A1-201ENST00000304636 TAS2R16Q9NYV7 291 aa12.08□□□□□ -0.48
COL3A1-201ENST00000304636 CDHR4A6H8M9 788 aa12.08□□□□□ -0.48
COL3A1-201ENST00000304636 H0YIV9 168 aa12.08□□□□□ -0.48
COL3A1-201ENST00000304636 PTBP1P26599 531 aaKnown RBP eCLIP12.08□□□□□ -0.48
COL3A1-201ENST00000304636 RGRP47804 291 aa12.08□□□□□ -0.48
COL3A1-201ENST00000304636 ZNF84P51523 738 aa12.08□□□□□ -0.48
COL3A1-201ENST00000304636 SLC35A2P78381 396 aa12.08□□□□□ -0.48
COL3A1-201ENST00000304636 SHC2P98077 582 aa12.08□□□□□ -0.48
COL3A1-201ENST00000304636 ZNF704Q6ZNC4 412 aaPredicted RBP12.08□□□□□ -0.48
COL3A1-201ENST00000304636 DAZLQ92904 295 aaKnown RBP12.08□□□□□ -0.48
COL3A1-201ENST00000304636 ZBTB8AQ96BR9 441 aa12.08□□□□□ -0.48
COL3A1-201ENST00000304636 GPR78Q96P69 363 aa12.08□□□□□ -0.48
COL3A1-201ENST00000304636 WDR77Q9BQA1 342 aaPredicted RBP12.08□□□□□ -0.48
COL3A1-201ENST00000304636 A0A0A6YYH2 397 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 A0A0D9SG52 128 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 A0A1W2PP55 124 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 A6NJ64 397 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 POLR1CO15160 346 aaPredicted RBP12.07□□□□□ -0.48
COL3A1-201ENST00000304636 TP53P04637 393 aaPredicted RBP12.07□□□□□ -0.48
COL3A1-201ENST00000304636 PKLRP30613 574 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 GP2P55259 537 aaKnown RBP12.07□□□□□ -0.48
COL3A1-201ENST00000304636 GPM6BQ13491 265 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 IL20RBQ6UXL0 311 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 RFPL4BQ6ZWI9 263 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 C3orf58Q8NDZ4 430 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 SLC7A6Q92536 515 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 ZNF582Q96NG8 517 aaPredicted RBP12.07□□□□□ -0.48
COL3A1-201ENST00000304636 TUBB1Q9H4B7 451 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 C2orf42Q9NWW7 574 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 ASIC5Q9NY37 505 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 NPC1O15118 1278 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 GPR39O43194 453 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 CLEC3AO75596 197 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 TAS2R19P59542 299 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 XKR7Q5GH72 579 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 C6orf132Q5T0Z8 1188 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 ALKAL1Q6UXT8 129 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 ZNF546Q86UE3 836 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 L3MBTL4Q8NA19 623 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 TSTD1Q8NFU3 115 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 TRIB2Q92519 343 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 SLC39A13Q96H72 371 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 ZNF226Q9NYT6 803 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 BOLA1Q9Y3E2 137 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 ZBTB42B2RXF5 422 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 C9J4A7 227 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 P2RX6O15547 441 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 LCMT2O60294 686 aaKnown RBP12.07□□□□□ -0.48
COL3A1-201ENST00000304636 GJB3O75712 270 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 CNMDO75829 334 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 PSMB1P20618 241 aaKnown RBP12.07□□□□□ -0.48
COL3A1-201ENST00000304636 NFYAP23511 347 aaPredicted RBP12.07□□□□□ -0.48
COL3A1-201ENST00000304636 PSMB10P40306 273 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 SYPL1Q16563 259 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 RPL22L1Q6P5R6 122 aaKnown RBP12.07□□□□□ -0.48
COL3A1-201ENST00000304636 BEND4Q6ZU67 534 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 SH2D5Q6ZV89 423 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 TMEM156Q8N614 296 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 METTL27Q8N6F8 245 aaPredicted RBP12.07□□□□□ -0.48
COL3A1-201ENST00000304636 MYADMQ96S97 322 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 EGLN3Q9H6Z9 239 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 UBE2J1Q9Y385 318 aaPredicted RBP12.07□□□□□ -0.48
COL3A1-201ENST00000304636 FAM183AA6NL82 134 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 GPRIN2O60269 458 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 JUNDP17535 347 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 CSNK2A1P68400 391 aaPredicted RBP12.07□□□□□ -0.48
COL3A1-201ENST00000304636 PPA1Q15181 289 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 C3orf33Q6P1S2 294 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 GLB1L2Q8IW92 636 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 RNF175Q8N4F7 328 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 CSNK2A3Q8NEV1 391 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 TEX37Q96LM6 180 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 MBOAT4Q96T53 435 aa12.07□□□□□ -0.48
COL3A1-201ENST00000304636 FAM171A2A8MVW0 826 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 SYT7O43581 403 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 RNGTTO60942 597 aaKnown RBP12.06□□□□□ -0.48
COL3A1-201ENST00000304636 APBB3O95704 486 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 SLC26A5P58743 744 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 FIGLAQ6QHK4 219 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 DLEU7Q6UYE1 221 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 DPPA4Q7L190 304 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 HSD11B1LQ7Z5J1 315 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 ACOT4Q8N9L9 421 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 ZNF480Q8WV37 535 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 BTBD2Q9BX70 525 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 ACTR10Q9NZ32 417 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 USP36Q9P275 1121 aaKnown RBP12.06□□□□□ -0.48
COL3A1-201ENST00000304636 COPS3Q9UNS2 423 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 UBL3O95164 117 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 PLGP00747 810 aaPredicted RBP12.06□□□□□ -0.48
COL3A1-201ENST00000304636 FBXO45P0C2W1 286 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 SLC2A5P22732 501 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 IL13RA1P78552 427 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 SEMA3BQ13214 749 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 NINJ1Q92982 152 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 SLC35B4Q969S0 331 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 NELFAQ9H3P2 528 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 SLC2A4RGQ9NR83 387 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms