RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 CBLCQ9ULV8 474 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 ARID1BQ8NFD5 2236 aaPredicted RBP14.16□□□□□ -0.14
SF3B4-201ENST00000271628 VCANP13611 3396 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 NPIPA5A0A0B4J1W7 369 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 SYNDIG1LA6NDD5 238 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 TMEM221A6NGB7 291 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 NPIPA7E9PJI5 369 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 UPK1BO75841 260 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 THY1P04216 161 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 IGFBP1P08833 259 aaPredicted RBP14.16□□□□□ -0.14
SF3B4-201ENST00000271628 ANKRD34CP0C6C1 535 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 NPIPA8P0DM63 369 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 CT45A8P0DMV1 189 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 CT45A9P0DMV2 189 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 FBLP22087 321 aaKnown RBP14.16□□□□□ -0.14
SF3B4-201ENST00000271628 FPR3P25089 353 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 PI4KAP42356 2102 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 CDC20Q12834 499 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 GINS1Q14691 196 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 OR1Q1Q15612 314 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 ZNF181Q2M3W8 571 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 CT45A2Q5DJT8 189 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 TMEM201Q5SNT2 666 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 SLC25A30Q5SVS4 291 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 MFSD4BQ5TF39 518 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 ZC3H14Q6PJT7 736 aaKnown RBP14.16□□□□□ -0.14
SF3B4-201ENST00000271628 CADM3Q8N126 398 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 OR4N2Q8NGD1 307 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 CEP76Q8TAP6 659 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 TEX47Q8TBZ9 253 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 SENP5Q96HI0 755 aaPredicted RBP14.16□□□□□ -0.14
SF3B4-201ENST00000271628 ZNF559Q9BR84 538 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 POLDIP3Q9BY77 421 aaKnown RBP14.16□□□□□ -0.14
SF3B4-201ENST00000271628 GAREM1Q9H706 876 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 CPNE5Q9HCH3 593 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 SRPK3Q9UPE1 567 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 OR10H1Q9Y4A9 318 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 CPED1A4D0V7 1026 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 CNOT3O75175 753 aaKnown RBP14.15□□□□□ -0.14
SF3B4-201ENST00000271628 ADORA3P0DMS8 318 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 GADD45AP24522 165 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 NUDT6P53370 316 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 LSM11P83369 360 aaKnown RBP eCLIP14.15□□□□□ -0.14
SF3B4-201ENST00000271628 ZNF45Q02386 682 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 ST3GAL4Q11206 333 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 IRF3Q14653 427 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 ZNF141Q15928 474 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 OCLNQ16625 522 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 MINDY4Q4G0A6 757 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 PDZK1Q5T2W1 519 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 MEDAGQ5VYS4 303 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 SLC27A4Q6P1M0 643 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 GUSBP11Q6P575 273 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 ZNF613Q6PF04 617 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 NPSR1Q6W5P4 371 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 ZAR1Q86SH2 424 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 SNX29P2Q8IUI4 249 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 CMIPQ8IY22 773 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 MAML2Q8IZL2 1156 aaPredicted RBP14.15□□□□□ -0.14
SF3B4-201ENST00000271628 B3GNT7Q8NFL0 401 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 PTPMT1Q8WUK0 201 aaPredicted RBP14.15□□□□□ -0.14
SF3B4-201ENST00000271628 NAT6Q93015 286 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 FAM46AQ96IP4 442 aaKnown RBP14.15□□□□□ -0.14
SF3B4-201ENST00000271628 SLC46A1Q96NT5 459 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 IL4I1Q96RQ9 567 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 TEX12Q9BXU0 123 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 TMEM27Q9HBJ8 222 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 SLC25A19Q9HC21 320 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 GPR83Q9NYM4 423 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 CCDC59Q9P031 241 aaKnown RBP14.15□□□□□ -0.14
SF3B4-201ENST00000271628 DTX4Q9Y2E6 619 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 CLCA3PQ9Y6N3 262 aa14.15□□□□□ -0.14
SF3B4-201ENST00000271628 IGKV3D-11A0A0A0MRZ8 115 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 POLR1CO15160 346 aaPredicted RBP14.14□□□□□ -0.15
SF3B4-201ENST00000271628 SIGLEC6O43699 453 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 HYAL3O43820 417 aaPredicted RBP14.14□□□□□ -0.15
SF3B4-201ENST00000271628 CFIP05156 583 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 STSP08842 583 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 GKN3PP0CG01 181 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 PIPP12273 146 aaPredicted RBP14.14□□□□□ -0.15
SF3B4-201ENST00000271628 TGFBR1P36897 503 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 PCYT1AP49585 367 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 RGS6P49758 472 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 ATP12AP54707 1039 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 DNASE1L3Q13609 305 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.14□□□□□ -0.15
SF3B4-201ENST00000271628 ARHGAP40Q5TG30 622 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 TMEM151BQ8IW70 566 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 NRMQ8IXM6 262 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 OR4D9Q8NGE8 314 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 TMEM255BQ8WV15 326 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.14□□□□□ -0.15
SF3B4-201ENST00000271628 OIT3Q8WWZ8 545 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 OSTF1Q92882 214 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 CDCA4Q9BXL8 241 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 SLC7A5P2Q9GIP4 190 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 MKKSQ9NPJ1 570 aaPredicted RBP14.14□□□□□ -0.15
SF3B4-201ENST00000271628 PNO1Q9NRX1 252 aaKnown RBP14.14□□□□□ -0.15
SF3B4-201ENST00000271628 TVP23BQ9NYZ1 205 aa14.14□□□□□ -0.15
SF3B4-201ENST00000271628 SLC6A14Q9UN76 642 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms