RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 MEX3DQ86XN8 651 aaKnown RBP10.73□□□□□ -0.69
VPS4A-201ENST00000254950 DNAJA3Q96EY1 480 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 RBP7Q96R05 134 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 LIN28AQ9H9Z2 209 aaKnown RBP10.73□□□□□ -0.69
VPS4A-201ENST00000254950 IL20RAQ9UHF4 553 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 VDAC3Q9Y277 283 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 OR6C76A6NM76 312 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 MT-ND2P03891 347 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 ZNF628Q5EBL2 1059 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 ZNF613Q6PF04 617 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 ZSCAN1Q8NBB4 408 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 B3GNT7Q8NFL0 401 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 SAP25Q8TEE9 199 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 MND1Q9BWT6 205 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 ALKBH4Q9NXW9 302 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 TMEM9Q9P0T7 183 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 ERVK-18Q9QC07 812 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 ZNF229Q9UJW7 825 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 SLCO1B1Q9Y6L6 691 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 SPTBP11277 2137 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 A0A1W2PRQ8 180 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 MAD2L1BPQ15013 274 aaPredicted RBP10.73□□□□□ -0.69
VPS4A-201ENST00000254950 NHSL2Q5HYW2 709 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 PERM1Q5SV97 790 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 UGT2A3Q6UWM9 527 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 FRRS1Q6ZNA5 592 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 BCORP1Q8N888 145 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 DUSP19Q8WTR2 217 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 GATA6Q92908 595 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 ABTB1Q969K4 478 aaPredicted RBP10.73□□□□□ -0.69
VPS4A-201ENST00000254950 NXF5Q9H1B4 397 aaKnown RBP10.73□□□□□ -0.69
VPS4A-201ENST00000254950 CRNNQ9UBG3 495 aaPredicted RBP10.73□□□□□ -0.69
VPS4A-201ENST00000254950 SH3PXD2BA1X283 911 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 FAM25AB3EWG3 89 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 FAM25CB3EWG5 89 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 FAM25GB3EWG6 89 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 FMO6PO60774 539 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 GASTP01350 101 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 DCKP27707 260 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 HTR3AP46098 478 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 GIPRP48546 466 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 OR2B6P58173 313 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 PRPS1P60891 318 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 EIF3IQ13347 325 aaKnown RBP10.73□□□□□ -0.69
VPS4A-201ENST00000254950 ARMCX4Q5H9R4 360 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 TCTN3Q6NUS6 607 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 OR51G2Q8NGK0 314 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 C8orf44Q96CB5 159 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 PRR14Q9BWN1 585 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 VN1R1Q9GZP7 353 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 HMG20AQ9NP66 347 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 ACER3Q9NUN7 267 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 EXOSC1Q9Y3B2 195 aaKnown RBP10.73□□□□□ -0.69
VPS4A-201ENST00000254950 NPFFR2Q9Y5X5 522 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 ARHGEF17Q96PE2 2063 aaPredicted RBP10.72□□□□□ -0.69
VPS4A-201ENST00000254950 hCG_2014768A0A024R1R8 64 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 SLC22A31A6NKX4 558 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 NKX2-2O95096 273 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 SNX4O95219 450 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 RAB36O95755 333 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 CTXN1P60606 82 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 C17orf67Q0P5P2 114 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 TUBA3CQ13748 450 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 MPEG1Q2M385 716 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 OR5M10Q6IEU7 315 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 KLHL24Q6TFL4 600 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 SLC41A2Q96JW4 573 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 SLC52A3Q9NQ40 469 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 SACM1LQ9NTJ5 587 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 KCNE3Q9Y6H6 103 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 KIAA1671Q9BY89 1806 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 CYR61O00622 381 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 CHMP24386 653 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 ZFP36L2P47974 494 aaKnown RBP10.72□□□□□ -0.69
VPS4A-201ENST00000254950 SSR4P51571 173 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 GBX2P52951 348 aaPredicted RBP10.72□□□□□ -0.69
VPS4A-201ENST00000254950 PIGFQ07326 219 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 PCM1Q15154 2024 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 NKG7Q16617 165 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 PRICKLE4Q2TBC4 344 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 ZNF691Q5VV52 312 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 TBPL2Q6SJ96 375 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 DHRS13Q6UX07 377 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 MBOAT2Q6ZWT7 520 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 GDF7Q7Z4P5 450 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 RPS19BP1Q86WX3 136 aaKnown RBP10.72□□□□□ -0.69
VPS4A-201ENST00000254950 CLIP4Q8N3C7 705 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 OR6N1Q8NGY5 312 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 ZNF671Q8TAW3 534 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 SLC7A13Q8TCU3 470 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 MENTQ9BUN1 341 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 OR52D1Q9H346 318 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 LDAHQ9H6V9 325 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 TTC28Q96AY4 2481 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 MT-CO3P00414 261 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 STSP08842 583 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 CKMT1AP12532 417 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 ZNF28P17035 718 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 PPP2R2BQ00005 443 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 SF3A2Q15428 464 aaKnown RBP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms