RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 UBQLN3Q9H347 655 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 C20orf141Q9NUB4 165 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 PRKAG2Q9UGJ0 569 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 SF3B6Q9Y3B4 125 aaKnown RBP11.16□□□□□ -0.62
USHBP1-201ENST00000252597 FRMPD3Q5JV73 1810 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 LAMA1P25391 3075 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 TMEM129A0AVI4 362 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 M0R233 179 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 SLC43A1O75387 559 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 LATS1O95835 1130 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 TEAD1P28347 426 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 SLC7A9P82251 487 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 CDK5Q00535 292 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 TSPAN31Q12999 210 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 DHCR24Q15392 516 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 ALKAL2Q6UX46 152 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 IKBIPQ70UQ0 350 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 DPPA4Q7L190 304 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 GDF7Q7Z4P5 450 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 TCTE3Q8IZS6 198 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 OR4C6Q8NH72 309 aa11.16□□□□□ -0.62
USHBP1-201ENST00000252597 FAM86C2PA6NEL3 165 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 CDC123O75794 336 aaPredicted RBP11.15□□□□□ -0.62
USHBP1-201ENST00000252597 TBX6O95947 436 aaPredicted RBP11.15□□□□□ -0.62
USHBP1-201ENST00000252597 FBXO45P0C2W1 286 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 ADRB3P13945 408 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 MAPK9P45984 424 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 VEGFCP49767 419 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 LIMK1P53667 647 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 ZNF33BQ06732 778 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 CRMP1Q14194 572 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 FGD2Q7Z6J4 655 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 SLC44A3Q8N4M1 653 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 PTCHD1Q96NR3 888 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 DERL3Q96Q80 235 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 SPTBN5Q9NRC6 3674 aaKnown RBP11.15□□□□□ -0.62
USHBP1-201ENST00000252597 VPS13AQ96RL7 3174 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 FXYD6-FXYD2A0A087WZ82 144 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 GRXCR1A8MXD5 290 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 LGALS8O00214 317 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 CFDP00746 253 aaPredicted RBP11.15□□□□□ -0.62
USHBP1-201ENST00000252597 PRNPP04156 253 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 TFPIP10646 304 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 FNTBP49356 437 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 EPHA5P54756 1037 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 EXOSC2Q13868 293 aaKnown RBP11.15□□□□□ -0.62
USHBP1-201ENST00000252597 TMEM201Q5SNT2 666 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 PSRC1Q6PGN9 363 aaPredicted RBP11.15□□□□□ -0.62
USHBP1-201ENST00000252597 FAM111BQ6SJ93 734 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 C9orf62Q8N4C0 152 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 RPLP0P6Q8NHW5 317 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 ELMOD3Q96FG2 381 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 METTL2AQ96IZ6 378 aaKnown RBP11.15□□□□□ -0.62
USHBP1-201ENST00000252597 COQ10AQ96MF6 247 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 FXYD6Q9H0Q3 95 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 NIPAL2Q9H841 368 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 FOLH1BQ9HBA9 442 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 FBXO34Q9NWN3 711 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 SPHK1Q9NYA1 384 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 MARK1Q9P0L2 795 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 DEC1Q9P2X7 70 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 CDHR4A6H8M9 788 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 H0YC42 278 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 PEX12O00623 359 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 ARPC1BO15143 372 aaKnown RBP11.15□□□□□ -0.62
USHBP1-201ENST00000252597 CTSAP10619 480 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 RAB3BP20337 219 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 BCL6P41182 706 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 CSNK1G2P78368 415 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 TEKQ02763 1124 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 TP53BP1Q12888 1972 aaPredicted RBP11.15□□□□□ -0.62
USHBP1-201ENST00000252597 FRRS1Q6ZNA5 592 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 CREB3L2Q70SY1 520 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 RFLNBQ8N5W9 214 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 LINC01555Q8NAE3 123 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 GATSQ8NAP1 163 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 OR52E2Q8NGJ4 325 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 OR5J2Q8NH18 312 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 C1orf216Q8TAB5 229 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 OR14A2Q96R54 314 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 MARVELD1Q9BSK0 173 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 TMEM106CQ9BVX2 250 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 LHX9Q9NQ69 397 aa11.15□□□□□ -0.62
USHBP1-201ENST00000252597 MYEF2Q9P2K5 600 aaKnown RBP11.15□□□□□ -0.62
USHBP1-201ENST00000252597 RTTNQ86VV8 2226 aa11.14□□□□□ -0.63
USHBP1-201ENST00000252597 TRPM6Q9BX84 2022 aa11.14□□□□□ -0.63
USHBP1-201ENST00000252597 REV3LO60673 3130 aa11.14□□□□□ -0.63
USHBP1-201ENST00000252597 RIIAD1A6NNX1 92 aa11.14□□□□□ -0.63
USHBP1-201ENST00000252597 SURF4O15260 269 aa11.14□□□□□ -0.63
USHBP1-201ENST00000252597 MT-ND5P03915 603 aa11.14□□□□□ -0.63
USHBP1-201ENST00000252597 TRAPPC2P0DI81 140 aa11.14□□□□□ -0.63
USHBP1-201ENST00000252597 TRAPPC2BP0DI82 140 aa11.14□□□□□ -0.63
USHBP1-201ENST00000252597 PCSK2P16519 638 aa11.14□□□□□ -0.63
USHBP1-201ENST00000252597 EDNRAP25101 427 aa11.14□□□□□ -0.63
USHBP1-201ENST00000252597 ADH7P40394 386 aa11.14□□□□□ -0.63
USHBP1-201ENST00000252597 KIAA1024LP59773 190 aa11.14□□□□□ -0.63
USHBP1-201ENST00000252597 ERVFC1P60507 584 aa11.14□□□□□ -0.63
USHBP1-201ENST00000252597 FUT5Q11128 374 aa11.14□□□□□ -0.63
USHBP1-201ENST00000252597 ZNF155Q12901 538 aaPredicted RBP11.14□□□□□ -0.63
USHBP1-201ENST00000252597 SRSF5Q13243 272 aaKnown RBP11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms