RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 CTPS2Q9NRF8 586 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 GNG8Q9UK08 70 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 PLOD2O00469 737 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 CHP2O43745 196 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 PLOD3O60568 738 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 DPM1O60762 260 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 EFEMP2O95967 443 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 PRR35P0CG20 571 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 T-ENOLP0DO92 83 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 COL9A1P20849 921 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 MOGQ16653 247 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 MARCH9Q86YJ5 346 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 ZNF283Q8N7M2 679 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 OR6N2Q8NGY6 317 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 ARL5BQ96KC2 179 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 TREX2Q9BQ50 279 aaPredicted RBP12.73□□□□□ -0.37
LDLR-201ENST00000252444 GABARAPL1Q9H0R8 117 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 ARRDC1-AS1Q9H2J1 176 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 FN3KQ9H479 309 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 ITGB1BP2Q9UKP3 347 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 RNF6Q9Y252 685 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 A0A1W2PRQ8 180 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 CDC14CA4D256 554 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 TFECO14948 347 aaPredicted RBP12.72□□□□□ -0.37
LDLR-201ENST00000252444 GP1BAP07359 652 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 BMP1P13497 986 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 FUT1P19526 365 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 GDF1P27539 372 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 SLC6A9P48067 706 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 DUSP8Q13202 625 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 GRINAQ7Z429 371 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 TRIM63Q969Q1 353 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 TEX10Q9NXF1 929 aaPredicted RBP12.72□□□□□ -0.37
LDLR-201ENST00000252444 GREM1O60565 184 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 KDM4BO94953 1096 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 PAX7P23759 505 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 FCARP24071 287 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 CBX5P45973 191 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 RPS26P62854 115 aaKnown RBP12.72□□□□□ -0.37
LDLR-201ENST00000252444 MMP21Q8N119 569 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 PAPD5Q8NDF8 572 aaKnown RBP12.72□□□□□ -0.37
LDLR-201ENST00000252444 ELP5Q8TE02 316 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 FOXRED1Q96CU9 486 aaPredicted RBP12.72□□□□□ -0.37
LDLR-201ENST00000252444 DIRAS2Q96HU8 199 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 CENPMQ9NSP4 180 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 POLHQ9Y253 713 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 GPC6Q9Y625 555 aaPredicted RBP12.72□□□□□ -0.37
LDLR-201ENST00000252444 FPR3P25089 353 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 P2RX1P51575 399 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 CTXN1P60606 82 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 TMEM92Q6UXU6 159 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 NDUFAF7Q7L592 441 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 BPIFA2Q96DR5 249 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 FEVQ99581 238 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 SNX11Q9Y5W9 270 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 CYB561P49447 251 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 ENTPD8Q5MY95 495 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 PYHIN1Q6K0P9 492 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 B3GNT7Q8NFL0 401 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 RSPRY1Q96DX4 576 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 MMP27Q9H306 513 aa12.72□□□□□ -0.37
LDLR-201ENST00000252444 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 FBP2O00757 339 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 CSTBP04080 98 aaKnown RBP12.71□□□□□ -0.37
LDLR-201ENST00000252444 MTNR1AP48039 350 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 SPRED1Q7Z699 444 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 NLGN4XQ8N0W4 816 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 NLGN4YQ8NFZ3 816 aaPredicted RBP12.71□□□□□ -0.37
LDLR-201ENST00000252444 GIMAP5Q96F15 307 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 EDARQ9UNE0 448 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 MEMO1Q9Y316 297 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 CLCA1A8K7I4 914 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 CSNK1A1P48729 337 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 GMFBP60983 142 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 GALK2Q01415 458 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 IL18Q14116 193 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 Q6ZS52 159 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 LRRC56Q8IYG6 542 aaPredicted RBP12.71□□□□□ -0.37
LDLR-201ENST00000252444 LRRC17Q8N6Y2 441 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 ZNF433Q8N7K0 673 aaPredicted RBP12.71□□□□□ -0.37
LDLR-201ENST00000252444 TMEM163Q8TC26 289 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 PHYHIPQ92561 330 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 HOXB13Q92826 284 aaPredicted RBP12.71□□□□□ -0.37
LDLR-201ENST00000252444 SORBS1Q9BX66 1292 aaKnown RBP12.71□□□□□ -0.37
LDLR-201ENST00000252444 CXorf36Q9H7Y0 433 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 PALMDQ9NP74 551 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 KCNG2Q9UJ96 466 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 STUB1Q9UNE7 303 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 WASF3Q9UPY6 502 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 EMC9Q9Y3B6 208 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 FKBP7Q9Y680 259 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 ISPDA4D126 451 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 CDK2AP1O14519 115 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 ATP1B1P05026 303 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 NUDT6P53370 316 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 MAP4K2Q12851 820 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 ADGRF3Q8IZF5 1079 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 ZBTB8AQ96BR9 441 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 PPP1R14BQ96C90 147 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 FBXL20Q96IG2 436 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 130.2 ms