RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 INSIG1O15503 277 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 GGCTO75223 188 aaKnown RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 CA11O75493 328 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 NPSP0C0P6 89 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 TSPAN19P0C672 248 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 CALCRP30988 508 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 NUMBP49757 651 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 SEC61GP60059 68 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 SCAPQ12770 1279 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF404Q494X3 552 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 HECTD2Q5U5R9 776 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM107Q6UX40 140 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF100Q8IYN0 542 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 FAM71CQ8NEG0 241 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 BRI3BPQ8WY22 251 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 C1GALT1C1Q96EU7 318 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 WDR89Q96FK6 387 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 HHIPQ96QV1 700 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ANAPC13Q9BS18 74 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ZDHHC8Q9ULC8 765 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM218A2RU14 115 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 EPHB6O15197 1021 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 APBA3O96018 575 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 FASP25445 335 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 CDK8P49336 464 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 F2RL1P55085 397 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 PIGPP57054 158 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 PDZK1IP1Q13113 114 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 KCNJ11Q14654 390 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 CATSPEREQ5SY80 951 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 LBX2Q6XYB7 198 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 FAM183BPQ6ZVS7 135 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 OR56A3Q8NH54 315 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 TBCKQ8TEA7 893 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 PINX1Q96BK5 328 aaKnown RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 KCNK4Q9NYG8 393 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 PEMTQ9UBM1 199 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 NUFIP1Q9UHK0 495 aaKnown RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 C4orf47A7E2U8 309 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 RGS13O14921 159 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 TRAPPC6AO75865 159 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 OR13C7P0DN81 318 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ABOP16442 354 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 RORCP51449 518 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF266Q14584 549 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 SLC8B1Q6J4K2 584 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 MRPL21Q7Z2W9 205 aaKnown RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 OR13C6PQ8NH95 151 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 RGP1Q92546 391 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ARRDC3Q96B67 414 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 SLC6A18Q96N87 628 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 FCRL3Q96P31 734 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ACCSQ96QU6 501 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 CPXM1Q96SM3 734 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 P2RX4Q99571 388 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 NXF5Q9H1B4 397 aaKnown RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 NSUN3Q9H649 340 aaKnown RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ADAP2Q9NPF8 381 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 CLDN7O95471 211 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ALPLP05186 524 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 TEAD1P28347 426 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 CLDN8P56748 225 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 NKAIN1Q4KMZ8 207 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 SFRP5Q5T4F7 317 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 N4BP2L1Q5TBK1 243 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 RGS7BPQ6MZT1 257 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM251Q8N6I4 163 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 GPRC5AQ8NFJ5 357 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 PERPQ96FX8 193 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 MECRQ9BV79 373 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 DCSTAMPQ9H295 470 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 NPDC1Q9NQX5 325 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 PP2D1A8MPX8 630 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 CNTN5O94779 1100 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 CELF2O95319 508 aaKnown RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TCN2P20062 427 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GJA4P35212 333 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 CDKN1BP46527 198 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 CCNG1P51959 295 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 EPHA4P54764 986 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SURF2Q15527 256 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GCSAMLQ5JQS6 135 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 UNC93AQ86WB7 457 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SLC35F5Q8WV83 523 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 DCUN1D1Q96GG9 259 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 KREMEN1Q96MU8 473 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 LRRC3BQ96PB8 259 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SSU72Q9NP77 194 aaKnown RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 C1orf123Q9NWV4 160 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ELF5Q9UKW6 265 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 WNT6Q9Y6F9 365 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 A0A1B0GVM2 712 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 DLGAP1O14490 977 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 AGPAT2O15120 278 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 KIAA0513O60268 411 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GLP2RO95838 553 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 LINC00614P0C842 121 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 IL1R2P27930 398 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 YPEL5P62699 121 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms