RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ZNF540Q8NDQ6 660 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 OR7G2Q8NG99 324 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 POC1BQ8TC44 478 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 FAM110BQ8TC76 370 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 ZNF775Q96BV0 537 aaPredicted RBP12.76□□□□□ -0.37
CLN3-249ENST00000636685 ERP27Q96DN0 273 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 MS4A14Q96JA4 679 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 CDK15Q96Q40 435 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 KLHDC3Q9BQ90 382 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 C1QTNF6Q9BXI9 259 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 MYNNQ9NPC7 610 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 AHSPQ9NZD4 102 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 ARMCX1Q9P291 453 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 UTS2RQ9UKP6 389 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 PCDHB10Q9UN67 800 aa12.76□□□□□ -0.37
CLN3-249ENST00000636685 IGHV3-15A0A0B4J1V0 119 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 A0A1W2PRB8 838 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 ZNF500O60304 480 aaPredicted RBP12.75□□□□□ -0.37
CLN3-249ENST00000636685 UGDHO60701 494 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 KERAO60938 352 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 LILRA1O75019 489 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 RAD51DO75771 328 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 UTS2O95399 124 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 STMN1P16949 149 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 CHN2P52757 468 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 DVL1P1P54792 670 aaPredicted RBP12.75□□□□□ -0.37
CLN3-249ENST00000636685 DECR1Q16698 335 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 PLPPR5Q32ZL2 321 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 CYP27C1Q4G0S4 372 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 THSD4Q6ZMP0 1018 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 PDIK1LQ8N165 341 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 ZNF433Q8N7K0 673 aaPredicted RBP12.75□□□□□ -0.37
CLN3-249ENST00000636685 TRPC4APQ8TEL6 797 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 CPNE4Q96A23 557 aaPredicted RBP12.75□□□□□ -0.37
CLN3-249ENST00000636685 SNX18Q96RF0 628 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 VRK1Q99986 396 aaPredicted RBP12.75□□□□□ -0.37
CLN3-249ENST00000636685 CXorf36Q9H7Y0 433 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 IPPKQ9H8X2 491 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 GP6Q9HCN6 339 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 MYOZ1Q9NP98 299 aaPredicted RBP12.75□□□□□ -0.37
CLN3-249ENST00000636685 MED17Q9NVC6 651 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 TAS2R9Q9NYW1 312 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 ING1Q9UK53 422 aaPredicted RBP12.75□□□□□ -0.37
CLN3-249ENST00000636685 SLC25A15Q9Y619 301 aa12.75□□□□□ -0.37
CLN3-249ENST00000636685 C7orf72A4D263 438 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 STAMBPO95630 424 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 LTA4HP09960 611 aaKnown RBP12.74□□□□□ -0.37
CLN3-249ENST00000636685 MTHFD2P13995 350 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 ENPP1P22413 925 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 MANFP55145 182 aaKnown RBP12.74□□□□□ -0.37
CLN3-249ENST00000636685 PHC1P78364 1004 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 PRR5P85299 388 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 GALNT1Q10472 559 aaPredicted RBP12.74□□□□□ -0.37
CLN3-249ENST00000636685 GTF2H2Q13888 395 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 MORF4L2Q15014 288 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 PPP1R7Q15435 360 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 GRAMD1BQ3KR37 738 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 GTF2H2CQ6P1K8 395 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 GOLGA7Q7Z5G4 137 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 TRABD2AQ86V40 505 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 CDYL2Q8N8U2 506 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 TRIM58Q8NG06 486 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 HPS1Q92902 700 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 ZBTB8AQ96BR9 441 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 FAIM2Q9BWQ8 316 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 TIGARQ9NQ88 270 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 ACOT9Q9Y305 439 aa12.74□□□□□ -0.37
CLN3-249ENST00000636685 PLOD3O60568 738 aa12.73□□□□□ -0.37
CLN3-249ENST00000636685 SLU7O95391 586 aaKnown RBP12.73□□□□□ -0.37
CLN3-249ENST00000636685 TACSTD2P09758 323 aa12.73□□□□□ -0.37
CLN3-249ENST00000636685 ARL1P40616 181 aaPredicted RBP12.73□□□□□ -0.37
CLN3-249ENST00000636685 ZNF75DP51815 510 aa12.73□□□□□ -0.37
CLN3-249ENST00000636685 ARFIP2P53365 341 aa12.73□□□□□ -0.37
CLN3-249ENST00000636685 MLC1Q15049 377 aa12.73□□□□□ -0.37
CLN3-249ENST00000636685 ZKSCAN8Q15776 578 aaPredicted RBP12.73□□□□□ -0.37
CLN3-249ENST00000636685 SGO1Q5FBB7 561 aa12.73□□□□□ -0.37
CLN3-249ENST00000636685 ARL13AQ5H913 290 aaPredicted RBP12.73□□□□□ -0.37
CLN3-249ENST00000636685 FRG2Q64ET8 278 aa12.73□□□□□ -0.37
CLN3-249ENST00000636685 SVOPLQ8N434 492 aa12.73□□□□□ -0.37
CLN3-249ENST00000636685 GATSQ8NAP1 163 aa12.73□□□□□ -0.37
CLN3-249ENST00000636685 EXOSC8Q96B26 276 aaKnown RBP12.73□□□□□ -0.37
CLN3-249ENST00000636685 FRG2BQ96QU4 278 aa12.73□□□□□ -0.37
CLN3-249ENST00000636685 GPR22Q99680 433 aa12.73□□□□□ -0.37
CLN3-249ENST00000636685 PSD2Q9BQI7 771 aa12.73□□□□□ -0.37
CLN3-249ENST00000636685 ANKZF1Q9H8Y5 726 aa12.73□□□□□ -0.37
CLN3-249ENST00000636685 BCO1Q9HAY6 547 aa12.73□□□□□ -0.37
CLN3-249ENST00000636685 NSMCE4AQ9NXX6 385 aa12.73□□□□□ -0.37
CLN3-249ENST00000636685 SLC12A4Q9UP95 1085 aa12.73□□□□□ -0.37
CLN3-249ENST00000636685 TRAF6Q9Y4K3 522 aa12.73□□□□□ -0.37
CLN3-249ENST00000636685 CXorf49A8MYA2 514 aaPredicted RBP12.72□□□□□ -0.37
CLN3-249ENST00000636685 ATP6V1G2-DDX39BF2Z307 99 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 EFNA2O43921 213 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 ESRRBO95718 433 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 IGKV1D-16P01601 117 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 PCMT1P22061 227 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 ZNF41P51814 821 aaPredicted RBP12.72□□□□□ -0.37
CLN3-249ENST00000636685 RAB10P61026 200 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 SLC18A2Q05940 514 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 CCNIQ14094 377 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 FASTKD3Q14CZ7 662 aaKnown RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms