RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 SUSD1Q6UWL2 747 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 FAM124AQ86V42 546 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 MRPL41Q8IXM3 137 aaKnown RBP8.41□□□□□ -1.06
VCL-206ENST00000623461 FNDC9Q8TBE3 224 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 RAB6CQ9H0N0 254 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 KCNK12Q9HB15 430 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 LSM5Q9Y4Y9 91 aaKnown RBP8.41□□□□□ -1.06
VCL-206ENST00000623461 LATO43561 262 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 TPOP07202 933 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 SNRPGP62308 76 aaKnown RBP8.41□□□□□ -1.06
VCL-206ENST00000623461 TBPL1P62380 186 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 CHRNEQ04844 493 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 OR4C11Q6IEV9 310 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 ZNF534Q76KX8 674 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 COMMD6Q7Z4G1 85 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 ADGRF3Q8IZF5 1079 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 LRRC25Q8N386 305 aaPredicted RBP8.41□□□□□ -1.06
VCL-206ENST00000623461 ZNF680Q8NEM1 530 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 ZNF461Q8TAF7 563 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 NPLOC4Q8TAT6 608 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 UBXN10Q96LJ8 280 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 PITHD1Q9GZP4 211 aaPredicted RBP8.41□□□□□ -1.06
VCL-206ENST00000623461 IL21RQ9HBE5 538 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 C1GALT1Q9NS00 363 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 SLC22A23A1A5C7 686 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 ZNF850A8MQ14 1090 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 GPR89AB7ZAQ6 455 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 NDUFB2O95178 105 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 GPR89BP0CG08 455 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 CLCNKAP51800 687 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 PIN1Q13526 163 aaPredicted RBP8.41□□□□□ -1.06
VCL-206ENST00000623461 TP53I3Q53FA7 332 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 LRRC73Q5JTD7 316 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 C22orf39Q6P5X5 142 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 CLRN3Q8NCR9 226 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 OR4M1Q8NGD0 313 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 SLC25A44Q96H78 314 aaPredicted RBP8.41□□□□□ -1.06
VCL-206ENST00000623461 C4orf36Q96KX1 117 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 SFXN2Q96NB2 322 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 ACTRT3Q9BYD9 372 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 A0A0D9SEW6 157 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 B4DXG7 233 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 ONECUT3O60422 494 aaPredicted RBP8.4□□□□□ -1.06
VCL-206ENST00000623461 POLR2IP36954 125 aaKnown RBP8.4□□□□□ -1.06
VCL-206ENST00000623461 NR0B1P51843 470 aaKnown RBP8.4□□□□□ -1.06
VCL-206ENST00000623461 PRPS1P60891 318 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 RPS26P62854 115 aaKnown RBP8.4□□□□□ -1.06
VCL-206ENST00000623461 PGGHGQ32M88 737 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 SIAH3Q8IW03 269 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 OR5M3Q8NGP4 307 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 ZNF689Q96CS4 500 aaPredicted RBP8.4□□□□□ -1.06
VCL-206ENST00000623461 ACPTQ9BZG2 426 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 PGAP2Q9UHJ9 254 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 ZNF223Q9UK11 482 aaPredicted RBP8.4□□□□□ -1.06
VCL-206ENST00000623461 UBE2J1Q9Y385 318 aaPredicted RBP8.4□□□□□ -1.06
VCL-206ENST00000623461 ROBO1Q9Y6N7 1651 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 TSPAN11A1L157 253 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 A8MVJ9 347 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 GRXCR1A8MXD5 290 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 NCR1O76036 304 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 BPIP17213 487 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 SPI1P17947 270 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 ZP3P21754 424 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 RPS19P39019 145 aaKnown RBP8.4□□□□□ -1.06
VCL-206ENST00000623461 LPCAT3Q6P1A2 487 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 SFXN4Q6P4A7 337 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 KCNIP4Q6PIL6 250 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 KCT2Q8NC54 265 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 SLCO4A1Q96BD0 722 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 MAP6Q96JE9 813 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 TCEAL2Q9H3H9 227 aaPredicted RBP8.4□□□□□ -1.06
VCL-206ENST00000623461 DUSP21Q9H596 190 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 IGFLR1Q9H665 355 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 SLAMF8Q9P0V8 285 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 TMEM82A0PJX8 343 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 CDC123O75794 336 aaPredicted RBP8.4□□□□□ -1.06
VCL-206ENST00000623461 GKP32189 559 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 CASRP41180 1078 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 PREPP48147 710 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 UBE2KP61086 200 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 RPS26P11Q5JNZ5 115 aaPredicted RBP8.4□□□□□ -1.06
VCL-206ENST00000623461 C3orf33Q6P1S2 294 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 TBPL2Q6SJ96 375 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 IL17RDQ8NFM7 739 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 OR10Z1Q8NGY1 313 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 PHYHIPQ92561 330 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 PRAP1Q96NZ9 151 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 HHATLQ9HCP6 504 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 B3GAT2Q9NPZ5 323 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 HSFX1Q9UBD0 423 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 KPTNQ9Y664 436 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 TOGARAM1Q9Y4F4 1720 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 URB1O60287 2271 aaKnown RBP8.4□□□□□ -1.06
VCL-206ENST00000623461 CIB4A0PJX0 185 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 CXCL14O95715 111 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 HLA-AP01891 365 aaKnown RBP8.4□□□□□ -1.06
VCL-206ENST00000623461 PIM1P11309 404 aaPredicted RBP8.4□□□□□ -1.06
VCL-206ENST00000623461 CCR9P51686 369 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 RTL6Q6ICC9 239 aa8.4□□□□□ -1.06
VCL-206ENST00000623461 RPL22L1Q6P5R6 122 aaKnown RBP8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms