RNA–Protein interactions for RNA: ENST00000607882.5

RABGEF1-209, Transcript of RAB guanine nucleotide exchange factor 1, human

TSL 2

Gene RABGEF1, Length 2,654 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RABGEF1-209	ENST00000607882	LRTM1	Q9HBL6	345 aa		11.6	□□□□□ -0.55
RABGEF1-209	ENST00000607882	PALMD	Q9NP74	551 aa		11.6	□□□□□ -0.55
RABGEF1-209	ENST00000607882	USE1	Q9NZ43	259 aa		11.6	□□□□□ -0.55
RABGEF1-209	ENST00000607882	ERGIC3	Q9Y282	383 aa		11.6	□□□□□ -0.55
RABGEF1-209	ENST00000607882	PCDHB14	Q9Y5E9	798 aa		11.6	□□□□□ -0.55
RABGEF1-209	ENST00000607882	PCDHGA9	Q9Y5G4	932 aa	Known RBP	11.6	□□□□□ -0.55
RABGEF1-209	ENST00000607882	SULT1C4	O75897	302 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	SCEL	O95171	688 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	IL6	P05231	212 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	SERPINA7	P05543	415 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	CD63	P08962	238 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	CFL1	P23528	166 aa	Known RBP	11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	ATP6V1E1	P36543	226 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	CBX5	P45973	191 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	NR0B1	P51843	470 aa	Known RBP	11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	GP2	P55259	537 aa	Known RBP	11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	RAB38	P57729	211 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	GABARAPL2	P60520	117 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	IL5RA	Q01344	420 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	EIF2S3L	Q2VIR3	472 aa	Known RBP	11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	RUNDC3A	Q59EK9	446 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	TMEM64	Q6YI46	380 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	COMMD6	Q7Z4G1	85 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	CPT1C	Q8TCG5	803 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	UBE2E3	Q969T4	207 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	FAM120B	Q96EK7	910 aa	Known RBP	11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	APIP	Q96GX9	242 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	IP6K3	Q96PC2	410 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	SIGLEC12	Q96PQ1	595 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	OR1F2P	Q96R84	312 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	NTMT1	Q9BV86	223 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	CLMP	Q9H6B4	373 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	KAT8	Q9H7Z6	458 aa	Known RBP	11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	DCAF13	Q9NV06	445 aa	Known RBP	11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	ENPP5	Q9UJA9	477 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	B3GNT3	Q9Y2A9	372 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	TRBV11-1	A0A0K0K1C0	115 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	WWP2	O00308	870 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	MANBA	O00462	879 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	AIFM1	O95831	613 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	RAD23A	P54725	363 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	SLC26A5	P58743	744 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	LSM3	P62310	102 aa	Known RBP	11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	PHC1	P78364	1004 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	MAD2L1	Q13257	205 aa	Predicted RBP	11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	ZNF691	Q5VV52	312 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	SNX29P2	Q8IUI4	249 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	ZCCHC7	Q8N3Z6	543 aa	Known RBP	11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	OR5K1	Q8NHB7	308 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	ZNF566	Q969W8	418 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	CNPPD1	Q9BV87	410 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	ACPT	Q9BZG2	426 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	NT5DC2	Q9H857	520 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	PRDM9	Q9NQV7	894 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	VNN3	Q9NY84	501 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	TMEFF2	Q9UIK5	374 aa	Predicted RBP	11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	TUBD1	Q9UJT1	453 aa		11.59	□□□□□ -0.55
RABGEF1-209	ENST00000607882	CELSR2	Q9HCU4	2923 aa		11.58	□□□□□ -0.55
RABGEF1-209	ENST00000607882	LOC102723996	A0A087X1L8	192 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	TCRBV16S1A1N1	A0A5B0	115 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882		J3QKU1	62 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	BCKDK	O14874	412 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	ERAL1	O75616	437 aa	Known RBP	11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	GLA	P06280	429 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	BCKDHA	P12694	445 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	PCMT1	P22061	227 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	PTX3	P26022	381 aa	Predicted RBP	11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	FEN1	P39748	380 aa	Known RBP	11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	CASR	P41180	1078 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	SKP1	P63208	163 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	INPP5J	Q15735	1006 aa	Predicted RBP	11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	NNAT	Q16517	81 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	CTF1	Q16619	201 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	ZADH2	Q8N4Q0	377 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	GLB1L3	Q8NCI6	653 aa	Predicted RBP	11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	BARD1	Q99728	777 aa	Known RBP	11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	WNT5B	Q9H1J7	359 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	ZNF223	Q9UK11	482 aa	Predicted RBP	11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	DLGAP4	Q9Y2H0	992 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	FAM32A	Q9Y421	112 aa	Known RBP	11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	ZNF451	Q9Y4E5	1061 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	CLCA3P	Q9Y6N3	262 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	IGKV3D-11	A0A0A0MRZ8	115 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	C17orf105	B2RV13	164 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	SLC28A1	O00337	649 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	CLDN4	O14493	209 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	ANGPTL1	O95841	491 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	IGHE	P01854	428 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	FMO3	P31513	532 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	GPR85	P60893	370 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	PPA1	Q15181	289 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	ACER2	Q5QJU3	275 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	ABHD17B	Q5VST6	288 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	ANKRD9	Q96BM1	317 aa	Predicted RBP	11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	SH3YL1	Q96HL8	342 aa	Predicted RBP	11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	TSSK3	Q96PN8	268 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	INPP5K	Q9BT40	448 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	C19orf25	Q9UFG5	118 aa	Predicted RBP	11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	TMEM5	Q9Y2B1	443 aa		11.58	□□□□□ -0.56
RABGEF1-209	ENST00000607882	ORC6	Q9Y5N6	252 aa		11.58	□□□□□ -0.56

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