RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 SMPDL3BQ92485 455 aa12.8□□□□□ -0.36
LIG1-218ENST00000599322 ZBTB8AQ96BR9 441 aa12.8□□□□□ -0.36
LIG1-218ENST00000599322 C14orf79Q96F83 325 aa12.8□□□□□ -0.36
LIG1-218ENST00000599322 SH3YL1Q96HL8 342 aaPredicted RBP12.8□□□□□ -0.36
LIG1-218ENST00000599322 OR52E6Q96RD3 313 aa12.8□□□□□ -0.36
LIG1-218ENST00000599322 PANX1Q96RD7 426 aa12.8□□□□□ -0.36
LIG1-218ENST00000599322 WDR55Q9H6Y2 383 aaPredicted RBP12.8□□□□□ -0.36
LIG1-218ENST00000599322 AIG1Q9NVV5 245 aa12.8□□□□□ -0.36
LIG1-218ENST00000599322 GPATCH2Q9NW75 528 aa12.8□□□□□ -0.36
LIG1-218ENST00000599322 PAQR5Q9NXK6 330 aaPredicted RBP12.8□□□□□ -0.36
LIG1-218ENST00000599322 KCNN3Q9UGI6 736 aa12.8□□□□□ -0.36
LIG1-218ENST00000599322 VDAC3Q9Y277 283 aa12.8□□□□□ -0.36
LIG1-218ENST00000599322 SLC22A20A6NK97 555 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 EEF1E1-BLOC1S5C9J1V9 151 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 SYT5O00445 386 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 SEC14L5O43304 696 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 EEF1E1O43324 174 aaKnown RBP12.79□□□□□ -0.36
LIG1-218ENST00000599322 DIAPH2O60879 1101 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 SLC22A3O75751 556 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 RCBTB2O95199 551 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 ANP32DO95626 131 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 IL6P05231 212 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 ZNF17P17021 662 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 CAPN3P20807 821 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 EIF1P41567 113 aaKnown RBP12.79□□□□□ -0.36
LIG1-218ENST00000599322 CPA2P48052 419 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 KHKP50053 298 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 STX1BP61266 288 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 TLE4Q04727 773 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 FGFBP1Q14512 234 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 SPANXN4Q5MJ08 99 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 PPP4R4Q6NUP7 873 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 ARSKQ6UWY0 536 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 ZNF621Q6ZSS3 439 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 ANKRD46Q86W74 232 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 LIX1LQ8IVB5 337 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 DMRTC2Q8IXT2 367 aaPredicted RBP12.79□□□□□ -0.36
LIG1-218ENST00000599322 XAGE5Q8WWM1 108 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 RNASE6Q93091 150 aaKnown RBP12.79□□□□□ -0.36
LIG1-218ENST00000599322 UCN2Q96RP3 112 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 SFXN3Q9BWM7 321 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 PIGMQ9H3S5 423 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 RMND5AQ9H871 391 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 VIPAS39Q9H9C1 493 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 BTNL2Q9UIR0 455 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 ZNF337Q9Y3M9 751 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 FREM3P0C091 2139 aa12.79□□□□□ -0.36
LIG1-218ENST00000599322 NCKAP5O14513 1909 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 GJE1A6NN92 205 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 UBDO15205 165 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 POLR3GO15318 223 aaPredicted RBP12.78□□□□□ -0.36
LIG1-218ENST00000599322 TNFRSF21O75509 655 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 SYNGR4O95473 234 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 KRT75O95678 551 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 PGRP06401 933 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 CRHP06850 196 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 FCGR2AP12318 317 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 KIR2DL3P43628 341 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 SUMO3P55854 103 aaPredicted RBP12.78□□□□□ -0.36
LIG1-218ENST00000599322 WNT3P56703 355 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 CLDN18P56856 261 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 UFM1P61960 85 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 GPR68Q15743 365 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 EXOSC6Q5RKV6 272 aaKnown RBP12.78□□□□□ -0.36
LIG1-218ENST00000599322 APOOLQ6UXV4 268 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 SEM1Q6ZVN7 128 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 TMCO5AQ8N6Q1 288 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 TOR1AIP2Q8NFQ8 470 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 OR5D16Q8NGK9 328 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 NUDT8Q8WV74 236 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 INTS12Q96CB8 462 aaKnown RBP12.78□□□□□ -0.36
LIG1-218ENST00000599322 REXO5Q96IC2 774 aaKnown RBP12.78□□□□□ -0.36
LIG1-218ENST00000599322 SLC35A5Q9BS91 424 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 CACYBPQ9HB71 228 aaKnown RBP12.78□□□□□ -0.36
LIG1-218ENST00000599322 TIGARQ9NQ88 270 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 POLE3Q9NRF9 147 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 INTS9Q9NV88 658 aaKnown RBP12.78□□□□□ -0.36
LIG1-218ENST00000599322 DTNAQ9Y4J8 743 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 CELSR1Q9NYQ6 3014 aa12.78□□□□□ -0.36
LIG1-218ENST00000599322 ADGRG4Q8IZF6 3080 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 TMEM247A6NEH6 219 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 CCDC154A6NI56 674 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 RFXANKO14593 260 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 EIF1AYO14602 144 aaKnown RBP12.77□□□□□ -0.37
LIG1-218ENST00000599322 EIF4E2O60573 245 aaKnown RBP12.77□□□□□ -0.37
LIG1-218ENST00000599322 TGDSO95455 350 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 P2RX1P51575 399 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 ZNF136P52737 540 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 B3GALT5-AS1P59052 145 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 RPS26P62854 115 aaKnown RBP12.77□□□□□ -0.37
LIG1-218ENST00000599322 TFF3Q07654 80 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 GNA13Q14344 377 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 ARHGAP11BQ3KRB8 267 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 PDCD4Q53EL6 469 aaKnown RBP12.77□□□□□ -0.37
LIG1-218ENST00000599322 GPAT3Q53EU6 434 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 KLHL26Q53HC5 615 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 FBXW10Q5XX13 1052 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 GTF2IRD2BQ6EKJ0 949 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 GTF2IRD2Q86UP8 949 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 MIER2Q8N344 545 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms