RNA–Protein interactions for RNA: ENST00000599223.5

IRF3-223, Transcript of interferon regulatory factor 3, human

TSL 1 (best) BASIC

Gene IRF3, Length 1,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-223	ENST00000599223	NEFH	P12036	1026 aa		13.14	□□□□□ -0.31
IRF3-223	ENST00000599223	FCGR2A	P12318	317 aa		13.14	□□□□□ -0.31
IRF3-223	ENST00000599223	ZNF17	P17021	662 aa		13.14	□□□□□ -0.31
IRF3-223	ENST00000599223	PCSK6	P29122	969 aa		13.14	□□□□□ -0.31
IRF3-223	ENST00000599223	LSP1	P33241	339 aa		13.14	□□□□□ -0.31
IRF3-223	ENST00000599223	ZNHIT3	Q15649	155 aa	Predicted RBP	13.14	□□□□□ -0.31
IRF3-223	ENST00000599223	PLPPR5	Q32ZL2	321 aa		13.14	□□□□□ -0.31
IRF3-223	ENST00000599223	STAC2	Q6ZMT1	411 aa		13.14	□□□□□ -0.31
IRF3-223	ENST00000599223	C20orf204	Q6ZNR8	217 aa		13.14	□□□□□ -0.31
IRF3-223	ENST00000599223	BANP	Q8N9N5	519 aa		13.14	□□□□□ -0.31
IRF3-223	ENST00000599223	OR4C3	Q8NH37	302 aa		13.14	□□□□□ -0.31
IRF3-223	ENST00000599223	OR10D3	Q8NH80	312 aa		13.14	□□□□□ -0.31
IRF3-223	ENST00000599223	GPR151	Q8TDV0	419 aa		13.14	□□□□□ -0.31
IRF3-223	ENST00000599223	FBXO34	Q9NWN3	711 aa		13.14	□□□□□ -0.31
IRF3-223	ENST00000599223	MKS1	Q9NXB0	559 aa		13.14	□□□□□ -0.31
IRF3-223	ENST00000599223	DCDC2	Q9UHG0	476 aa		13.14	□□□□□ -0.31
IRF3-223	ENST00000599223		A0A1W2PRB8	838 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	ALG1L2	C9J202	215 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	KLF4	O43474	513 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	TYROBP	O43914	113 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	SS18L1	O75177	396 aa	Predicted RBP	13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	NKX2-2	O95096	273 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	IFI6	P09912	130 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	CREB1	P16220	341 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	SDC1	P18827	310 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	IL11	P20809	199 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	EFNA1	P20827	205 aa	Predicted RBP	13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	FPR1	P21462	350 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	TBXA2R	P21731	343 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	PRPH2	P23942	346 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	SHC1	P29353	583 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	CRHR1	P34998	444 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	PTH2R	P49190	550 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	RPS3A	P61247	264 aa	Known RBP	13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	OCRL	Q01968	901 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	C17orf67	Q0P5P2	114 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	FGFBP1	Q14512	234 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	CD226	Q15762	336 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	SGCB	Q16585	318 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	DUSP5	Q16690	384 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	GLYR1	Q49A26	553 aa	Predicted RBP	13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	FIGNL1	Q6PIW4	674 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	PRSS57	Q6UWY2	283 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	SLC16A11	Q8NCK7	471 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	OR6K3	Q8NGY3	331 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	CLHC1	Q8NHS4	586 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	POC1B	Q8TC44	478 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	FCRL1	Q96LA6	429 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	RNF145	Q96MT1	663 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	GSX2	Q9BZM3	304 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	TUBB1	Q9H4B7	451 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	MED17	Q9NVC6	651 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	CR1	P17927	2039 aa		13.13	□□□□□ -0.31
IRF3-223	ENST00000599223	FBN3	Q75N90	2809 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	GMNC	A6NCL1	334 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	TNFSF11	O14788	317 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	AKAP10	O43572	662 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	CXCL13	O43927	109 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	PLIN3	O60664	434 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	CRCP	O75575	148 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	KCNH1	O95259	989 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	PRPS2	P11908	318 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	NID1	P14543	1247 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	FRK	P42685	505 aa	Predicted RBP	13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	CLK3	P49761	638 aa	Known RBP	13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	RNF144A	P50876	292 aa	Predicted RBP	13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	PSMD4	P55036	377 aa	Known RBP	13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	PDE7A	Q13946	482 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	EXOSC6	Q5RKV6	272 aa	Known RBP	13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	CCNJ	Q5T5M9	372 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	MFSD12	Q6NUT3	480 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	ZNF704	Q6ZNC4	412 aa	Predicted RBP	13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	SZRD1	Q7Z422	152 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	CCDC63	Q8NA47	563 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	TCP10L	Q8TDR4	215 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	NUDT8	Q8WV74	236 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	C16orf58	Q96GQ5	468 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	ZNF764	Q96H86	408 aa	Predicted RBP	13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	SH3YL1	Q96HL8	342 aa	Predicted RBP	13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	GMPPA	Q96IJ6	420 aa	Predicted RBP	13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	MS4A4E	Q96PG1	132 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	TSSK3	Q96PN8	268 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	CCT7	Q99832	543 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	LRTM1	Q9HBL6	345 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	PLSCR4	Q9NRQ2	329 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	MID2	Q9UJV3	735 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	MRTO4	Q9UKD2	239 aa	Known RBP	13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	WBP11	Q9Y2W2	641 aa	Known RBP	13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	EMC9	Q9Y3B6	208 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	CAD	P27708	2225 aa		13.12	□□□□□ -0.31
IRF3-223	ENST00000599223	NUP214	P35658	2090 aa	Predicted RBP	13.11	□□□□□ -0.31
IRF3-223	ENST00000599223		A0A0J9YW62	118 aa		13.11	□□□□□ -0.31
IRF3-223	ENST00000599223	C7orf72	A4D263	438 aa		13.11	□□□□□ -0.31
IRF3-223	ENST00000599223	INAFM1	C9JVW0	142 aa		13.11	□□□□□ -0.31
IRF3-223	ENST00000599223	ADAMDEC1	O15204	470 aa		13.11	□□□□□ -0.31
IRF3-223	ENST00000599223	OIP5	O43482	229 aa		13.11	□□□□□ -0.31
IRF3-223	ENST00000599223	NDUFB5	O43674	189 aa		13.11	□□□□□ -0.31
IRF3-223	ENST00000599223	SEC22B	O75396	215 aa		13.11	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms