RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 C1GALT1C1Q96EU7 318 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 TRNT1Q96Q11 434 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 CGREF1Q99674 301 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 UGT2B28Q9BY64 529 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 HOXD1Q9GZZ0 328 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 MYLK2Q9H1R3 596 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 SDHAF3Q9NRP4 125 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 TAS2R10Q9NYW0 307 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 CARD8Q9Y2G2 431 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 MRPS18CQ9Y3D5 142 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 WDR45Q9Y484 360 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 FLNCQ14315 2725 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 WIPF3A6NGB9 483 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 SERINC4A6NH21 518 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 FXYD1O00168 92 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 CCL21O00585 134 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 AGR2O95994 175 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 LDLRP01130 860 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 NR2F1P10589 423 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 DSCR4P56555 118 aaPredicted RBP12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 DSTNP60981 165 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 TOMM34Q15785 309 aaPredicted RBP12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 ADRM1Q16186 407 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 TMEM44Q2T9K0 475 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 NHSL2Q5HYW2 709 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 RPS26P11Q5JNZ5 115 aaPredicted RBP12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 LRRC74BQ6ZQY2 392 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 CPLX4Q7Z7G2 160 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 DHDDSQ86SQ9 333 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 ZNF619Q8N2I2 560 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 FAM26EQ8N5C1 309 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 ZNF614Q8N883 585 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 OR14L1PQ8NHC6 308 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 POC1BQ8TC44 478 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 WDYHV1Q96HA8 205 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 SLC39A3Q9BRY0 314 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 EXO5Q9H790 373 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 ICAM5Q9UMF0 924 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 LIPT1Q9Y234 373 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 SLC5A6Q9Y289 635 aa12.88□□□□□ -0.35
SHKBP1-217ENST00000598558 C15orf38-AP3S2A0A0A6YYH1 394 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 OR14I1A6ND48 311 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 ANGPT2O15123 496 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 ADAM11O75078 769 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 BCHEP06276 602 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 HPGDP15428 266 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 GPX2P18283 190 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 HK1P19367 917 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 MAGEA8P43361 318 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 CLDN15P56746 228 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 MTPNP58546 118 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 ADORA2A-AS1P86434 159 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 NFYCQ13952 458 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 REP15Q6BDI9 236 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 B4GALNT2Q8NHY0 566 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 ABTB1Q969K4 478 aaPredicted RBP12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 CCDC120Q96HB5 630 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 TMEM19Q96HH6 336 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 ANKRD27Q96NW4 1050 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 DMRTA2Q96SC8 542 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 POLE3Q9NRF9 147 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 DKKL1Q9UK85 242 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 ACAD8Q9UKU7 415 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 MEMO1Q9Y316 297 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 ZNF337Q9Y3M9 751 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 L3MBTL1Q9Y468 752 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 CHST2Q9Y4C5 530 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 FAM215AQ9Y5M1 114 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 CAPN7Q9Y6W3 813 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 DSPPQ9NZW4 1301 aa12.87□□□□□ -0.35
SHKBP1-217ENST00000598558 SVILO95425 2214 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 MYO18BQ8IUG5 2567 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 A0A1B0GUH1 482 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 OR2M5A3KFT3 312 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 AGAP5A6NIR3 686 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 H0YC42 278 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 PRRG2O14669 202 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 HCRTR2O43614 444 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 EFNA2O43921 213 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 ZG16O60844 167 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 AGFG2O95081 481 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 IL11P20809 199 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 RPS4Y1P22090 263 aaKnown RBP12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 PSMA4P25789 261 aaKnown RBP12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 MSX1P28360 303 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 ADSLP30566 484 aaPredicted RBP12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 PGM1P36871 562 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 ADH7P40394 386 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 LHX2P50458 406 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 GZMMP51124 257 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 TPD52P55327 224 aaPredicted RBP12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 TXNL4AP83876 142 aaKnown RBP12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 SKP2Q13309 424 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 FGFBP1Q14512 234 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 CDSNQ15517 529 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 NANOGP8Q6NSW7 305 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 ZNF585AQ6P3V2 769 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 PLXDC2Q6UX71 529 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms