RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 SIKE1Q9BRV8 207 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 NMUR2Q9GZQ4 415 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 ZNF350Q9GZX5 532 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 SLC6A13Q9NSD5 602 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 CCDC167Q9P0B6 97 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 KLF2Q9Y5W3 355 aaPredicted RBP12.55□□□□□ -0.4
UPF1-205ENST00000598209 HCFC1P51610 2035 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 MED12LQ86YW9 2145 aa12.55□□□□□ -0.4
UPF1-205ENST00000598209 A0A0G2JND7 137 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 KDM4EB2RXH2 506 aaPredicted RBP12.54□□□□□ -0.4
UPF1-205ENST00000598209 H0Y3Z8 333 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 H3BNH8 94 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 HMGN4O00479 90 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 NR5A2O00482 541 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 HCRTR2O43614 444 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 FCMRO60667 390 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 KRT75O95678 551 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 EPPINO95925 133 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 ZCCHC18P0CG32 403 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 HTR1EP28566 365 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 CHRNB4P30926 498 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 ADH7P40394 386 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 ANXA11P50995 505 aaKnown RBP12.54□□□□□ -0.4
UPF1-205ENST00000598209 IRX1P78414 480 aaPredicted RBP12.54□□□□□ -0.4
UPF1-205ENST00000598209 TXNL4AP83876 142 aaKnown RBP12.54□□□□□ -0.4
UPF1-205ENST00000598209 GUCY1A3Q02108 690 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 SRYQ05066 204 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 FUT5Q11128 374 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 RCAN2Q14206 197 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 ZNF630Q2M218 657 aaPredicted RBP12.54□□□□□ -0.4
UPF1-205ENST00000598209 GLYR1Q49A26 553 aaPredicted RBP12.54□□□□□ -0.4
UPF1-205ENST00000598209 GTDC1Q4AE62 458 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 AGKQ53H12 422 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 COX20Q5RI15 118 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 C6orf10Q5SRN2 563 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 SLC2A7Q6PXP3 512 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 BLOC1S3Q6QNY0 202 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 ARSKQ6UWY0 536 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 SEM1Q6ZVN7 128 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 OR5M1Q8NGP8 315 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 B4GALNT2Q8NHY0 566 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 ZPLD1Q8TCW7 415 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 ZFP90Q8TF47 636 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 ROPN1LQ96C74 230 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 PIGQQ9BRB3 760 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 MKLN1Q9UL63 735 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 VDAC3Q9Y277 283 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 WDR45Q9Y484 360 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 DTNAQ9Y4J8 743 aa12.54□□□□□ -0.4
UPF1-205ENST00000598209 INTS1Q8N201 2190 aaKnown RBP12.53□□□□□ -0.4
UPF1-205ENST00000598209 A0A087WZY1 265 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 A0A0G2JNJ9 132 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 OR2M5A3KFT3 312 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 PRAMEF27A3QJZ7 478 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 FAM47E-STBD1D6RA91 191 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 GTPBP1O00178 669 aaKnown RBP12.53□□□□□ -0.4
UPF1-205ENST00000598209 OIP5O43482 229 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 TNFRSF21O75509 655 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 GUSBP08236 651 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 TROVE2P10155 538 aaKnown RBP eCLIP12.53□□□□□ -0.4
UPF1-205ENST00000598209 PEPDP12955 493 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 ZNF708P17019 499 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 NCF2P19878 526 aaPredicted RBP12.53□□□□□ -0.4
UPF1-205ENST00000598209 POU3F2P20265 443 aaPredicted RBP12.53□□□□□ -0.4
UPF1-205ENST00000598209 GRNP28799 593 aaKnown RBP12.53□□□□□ -0.4
UPF1-205ENST00000598209 CLDN18P56856 261 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 ZNF117Q03924 483 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 ZNF141Q15928 474 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 GPAT3Q53EU6 434 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 PDZK1Q5T2W1 519 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 RIPPLY2Q5TAB7 128 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 NSUN5P2Q63ZY6 315 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 TYW3Q6IPR3 259 aaKnown RBP12.53□□□□□ -0.4
UPF1-205ENST00000598209 LACC1Q8IV20 430 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 GTF2H4Q92759 462 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 SPDL1Q96EA4 605 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 TRIB1Q96RU8 372 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 KLHDC3Q9BQ90 382 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 TUBA1CQ9BQE3 449 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 PAIP1Q9H074 479 aaKnown RBP12.53□□□□□ -0.4
UPF1-205ENST00000598209 POLE3Q9NRF9 147 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 MED17Q9NVC6 651 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 FGFR1OP2Q9NVK5 253 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 TMEM45AQ9NWC5 275 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 Q9UFV3 132 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 KCNE5Q9UJ90 142 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 TRIM33Q9UPN9 1127 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 CARD8Q9Y2G2 431 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 ZNF337Q9Y3M9 751 aa12.53□□□□□ -0.4
UPF1-205ENST00000598209 SETXQ7Z333 2677 aaKnown RBP12.52□□□□□ -0.41
UPF1-205ENST00000598209 CENPVL1A0A0U1RR11 272 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 SERINC4A6NH21 518 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 CD8B2A6NJW9 211 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 FAM90A27PA6NNH2 459 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 SHISA8B8ZZ34 492 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 H3BML4 177 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 LINC01387J3KSC0 135 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 KIAA0513O60268 411 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 UGT2B17O75795 530 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 TOXO94900 526 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms