RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 CXXC5Q7LFL8 322 aaKnown RBP11.22□□□□□ -0.61
TRIM28-212ENST00000597995 ZNF611Q8N823 705 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 OR5M1Q8NGP8 315 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 AGR3Q8TD06 166 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 ZBTB9Q96C00 473 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 ZNF764Q96H86 408 aaPredicted RBP11.22□□□□□ -0.61
TRIM28-212ENST00000597995 TSSK3Q96PN8 268 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 CCT7Q99832 543 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 TMEM204Q9BSN7 226 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 Q9N2J8 555 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 PAQR5Q9NXK6 330 aaPredicted RBP11.22□□□□□ -0.61
TRIM28-212ENST00000597995 ZDHHC2Q9UIJ5 367 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 RAB21Q9UL25 225 aa11.22□□□□□ -0.61
TRIM28-212ENST00000597995 ATRQ13535 2644 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 TTC36A6NLP5 189 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 SS18L1O75177 396 aaPredicted RBP11.21□□□□□ -0.61
TRIM28-212ENST00000597995 CRLF1O75462 422 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 IFI6P09912 130 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 NEFHP12036 1026 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 BCKDHAP12694 445 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 NTSP30990 170 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 MAP3K8P41279 467 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 PRR5P85299 388 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 STX5Q13190 355 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 ZNHIT3Q15649 155 aaPredicted RBP11.21□□□□□ -0.61
TRIM28-212ENST00000597995 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.21□□□□□ -0.61
TRIM28-212ENST00000597995 EXOC3L2Q2M3D2 409 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 GALNTL6Q49A17 601 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 TNFAIP8L3Q5GJ75 292 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 STAC2Q6ZMT1 411 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 MARCH3Q86UD3 253 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 GGNQ86UU5 652 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 DDIASQ8IXT1 998 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 HOXB13Q92826 284 aaPredicted RBP11.21□□□□□ -0.61
TRIM28-212ENST00000597995 GMPPAQ96IJ6 420 aaPredicted RBP11.21□□□□□ -0.61
TRIM28-212ENST00000597995 LMF2Q9BU23 707 aaKnown RBP11.21□□□□□ -0.61
TRIM28-212ENST00000597995 PRRG4Q9BZD6 226 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 REEP4Q9H6H4 257 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 C3orf14Q9HBI5 128 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 GLRX2Q9NS18 164 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 DDX18Q9NVP1 670 aaKnown RBP11.21□□□□□ -0.61
TRIM28-212ENST00000597995 ADAM21Q9UKJ8 722 aa11.21□□□□□ -0.61
TRIM28-212ENST00000597995 FBN1P35555 2871 aaKnown RBP11.2□□□□□ -0.62
TRIM28-212ENST00000597995 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 UQCRHLA0A096LP55 91 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 GXYLT2A0PJZ3 443 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 HS3ST1O14792 307 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 PDPK1O15530 556 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 ITM2AO43736 263 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 SOX30O94993 753 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 UTS2O95399 124 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 CHEK2O96017 543 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 PLGP00747 810 aaPredicted RBP11.2□□□□□ -0.62
TRIM28-212ENST00000597995 IGKV1D-16P01601 117 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 ZNF17P17021 662 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 EFNA1P20827 205 aaPredicted RBP11.2□□□□□ -0.62
TRIM28-212ENST00000597995 EIF1AXP47813 144 aaKnown RBP11.2□□□□□ -0.62
TRIM28-212ENST00000597995 SLC6A8P48029 635 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 ATP5J2P56134 94 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 CTBP2P56545 445 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 HSPB3Q12988 150 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 MPP2Q14168 576 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 CAPRIN1Q14444 709 aaKnown RBP11.2□□□□□ -0.62
TRIM28-212ENST00000597995 KRT71Q3SY84 523 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 BEND4Q6ZU67 534 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 EXOC3L1Q86VI1 746 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 HOMEZQ8IX15 550 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 GIMAP5Q96F15 307 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 PKNOX2Q96KN3 472 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 TBL1XR1Q9BZK7 514 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 SIRT3Q9NTG7 399 aaPredicted RBP11.2□□□□□ -0.62
TRIM28-212ENST00000597995 NTMQ9P121 344 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 MCTS1Q9ULC4 181 aaKnown RBP11.2□□□□□ -0.62
TRIM28-212ENST00000597995 GPR52Q9Y2T5 361 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 TMED5Q9Y3A6 229 aa11.2□□□□□ -0.62
TRIM28-212ENST00000597995 A0A087WZY1 265 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 ESPNB1AK53 854 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 EIF1AYO14602 144 aaKnown RBP11.19□□□□□ -0.62
TRIM28-212ENST00000597995 ADAMDEC1O15204 470 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 PEX11AO75192 247 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 LYPLA1O75608 230 aaPredicted RBP11.19□□□□□ -0.62
TRIM28-212ENST00000597995 KCNH1O95259 989 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 ANGPTL1O95841 491 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 PLAUP00749 431 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 PSMB1P20618 241 aaKnown RBP11.19□□□□□ -0.62
TRIM28-212ENST00000597995 SERPINB5P36952 375 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 SERPINB4P48594 390 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 TNK1Q13470 666 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 ETFDHQ16134 617 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 EXOSC6Q5RKV6 272 aaKnown RBP11.19□□□□□ -0.62
TRIM28-212ENST00000597995 C6orf136Q5SQH8 315 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 GTF2IRD2BQ6EKJ0 949 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 ADAM5Q6NVV9 412 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 APOOLQ6UXV4 268 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 GTF2IRD2Q86UP8 949 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 STK32CQ86UX6 486 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 WDR75Q8IWA0 830 aaKnown RBP11.19□□□□□ -0.62
TRIM28-212ENST00000597995 OR10D3Q8NH80 312 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 PIK3R3Q92569 461 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 PPCDCQ96CD2 204 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms