RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	JADE3	Q92613	823 aa		9.42	□□□□□ -0.9
LSM4-205	ENST00000597776	CAVIN3	Q969G5	261 aa		9.42	□□□□□ -0.9
LSM4-205	ENST00000597776	ZBED6CL	Q96FA7	236 aa	Predicted RBP	9.42	□□□□□ -0.9
LSM4-205	ENST00000597776	ZNF764	Q96H86	408 aa	Predicted RBP	9.42	□□□□□ -0.9
LSM4-205	ENST00000597776	GMPPA	Q96IJ6	420 aa	Predicted RBP	9.42	□□□□□ -0.9
LSM4-205	ENST00000597776	C12orf49	Q9H741	205 aa		9.42	□□□□□ -0.9
LSM4-205	ENST00000597776	PLSCR4	Q9NRQ2	329 aa		9.42	□□□□□ -0.9
LSM4-205	ENST00000597776	NTM	Q9P121	344 aa		9.42	□□□□□ -0.9
LSM4-205	ENST00000597776	STOML1	Q9UBI4	398 aa		9.42	□□□□□ -0.9
LSM4-205	ENST00000597776	MCTS1	Q9ULC4	181 aa	Known RBP	9.42	□□□□□ -0.9
LSM4-205	ENST00000597776	C7orf72	A4D263	438 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	TMEM233	B4DJY2	109 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	COPE	O14579	308 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	AZIN1	O14977	448 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	LSM1	O15116	133 aa	Known RBP	9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	ADAMDEC1	O15204	470 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	OIP5	O43482	229 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	NTN1	O95631	604 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	ALOX5	P09917	674 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	HPGD	P15428	266 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	AGTR1	P30556	359 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	SFTPD	P35247	375 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	FRK	P42685	505 aa	Predicted RBP	9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	CCT5	P48643	541 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	PRIM2	P49643	509 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	ZNF41	P51814	821 aa	Predicted RBP	9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	NAA20	P61599	178 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	ZNF844	Q08AG5	666 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	PDE7A	Q13946	482 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	GALNTL6	Q49A17	601 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	BEX5	Q5H9J7	111 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	HBM	Q6B0K9	141 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	ALKBH2	Q6NS38	261 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	PLEKHM3	Q6ZWE6	761 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	PRIMA1	Q86XR5	153 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	C4orf33	Q8N1A6	199 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	COX18	Q8N8Q8	333 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	EPS8L3	Q8TE67	593 aa	Known RBP	9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	IGFBPL1	Q8WX77	278 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	ROBO4	Q8WZ75	1007 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	ZBTB8A	Q96BR9	441 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	PLPPR2	Q96GM1	343 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	METTL2A	Q96IZ6	378 aa	Known RBP	9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	BDH2	Q9BUT1	245 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	GATA5	Q9BWX5	397 aa	Predicted RBP	9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	GSX2	Q9BZM3	304 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	ACTR6	Q9GZN1	396 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	UBQLN4	Q9NRR5	601 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	SIRT3	Q9NTG7	399 aa	Predicted RBP	9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	GIN1	Q9NXP7	522 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	GIMAP2	Q9UG22	337 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	DSCAM	O60469	2012 aa		9.41	□□□□□ -0.9
LSM4-205	ENST00000597776	TLN2	Q9Y4G6	2542 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	NPIPA5	A0A0B4J1W7	369 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	NPIPA7	E9PJI5	369 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	SCD	O00767	359 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	TBX19	O60806	448 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	CNOT4	O95628	575 aa	Known RBP	9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	CHRNG	P07510	517 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	LINGO3	P0C6S8	592 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	NPIPA8	P0DM63	369 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	NEFH	P12036	1026 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	BCKDHA	P12694	445 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	PPP3CB	P16298	524 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	KRT4	P19013	534 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	ME2	P23368	584 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	RAC1	P63000	192 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	FOXF1	Q12946	379 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	LASP1	Q14847	261 aa	Known RBP	9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	PCLAF	Q15004	111 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	TSC22D1	Q15714	1073 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	EXOSC6	Q5RKV6	272 aa	Known RBP	9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	CPTP	Q5TA50	214 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	KANK2	Q63ZY3	851 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	ESPNL	Q6ZVH7	1005 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	DDIAS	Q8IXT1	998 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	LILRA2	Q8N149	483 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	OR6Y1	Q8NGX8	325 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	B4GALNT2	Q8NHY0	566 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	KIF18A	Q8NI77	898 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	ACTRT2	Q8TDY3	377 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	ABHD3	Q8WU67	409 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	UBLCP1	Q8WVY7	318 aa	Predicted RBP	9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	OSTF1	Q92882	214 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	CDS1	Q92903	461 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	FAM120B	Q96EK7	910 aa	Known RBP	9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	CHMP6	Q96FZ7	201 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	KLHL15	Q96M94	604 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	SRXN1	Q9BYN0	137 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	IQCG	Q9H095	443 aa	Known RBP	9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	ACSS1	Q9NUB1	689 aa	Predicted RBP	9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	ZCCHC3	Q9NUD5	404 aa	Known RBP	9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	PAQR5	Q9NXK6	330 aa	Predicted RBP	9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	DNAJC15	Q9Y5T4	150 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	ROS1	P08922	2347 aa		9.4	□□□□□ -0.9
LSM4-205	ENST00000597776	JMJD1C	Q15652	2540 aa		9.4	□□□□□ -0.91
LSM4-205	ENST00000597776	HEATR5A	Q86XA9	2040 aa		9.39	□□□□□ -0.91
LSM4-205	ENST00000597776	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	9.39	□□□□□ -0.91
LSM4-205	ENST00000597776	INAFM1	C9JVW0	142 aa		9.39	□□□□□ -0.91
LSM4-205	ENST00000597776	HS3ST1	O14792	307 aa		9.39	□□□□□ -0.91

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