RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 POLE3Q9NRF9 147 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 SACM1LQ9NTJ5 587 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 TUBA8Q9NY65 449 aaPredicted RBP13.72□□□□□ -0.21
TRIM28-207ENST00000597136 FLRT3Q9NZU0 649 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 MKLN1Q9UL63 735 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 KLF13Q9Y2Y9 288 aaPredicted RBP13.72□□□□□ -0.21
TRIM28-207ENST00000597136 WDR45Q9Y484 360 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 DSPPQ9NZW4 1301 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 KLRC4-KLRK1H3BQV0 150 aa13.71□□□□□ -0.21
TRIM28-207ENST00000597136 ETS2P15036 469 aa13.71□□□□□ -0.21
TRIM28-207ENST00000597136 ATP6V1B2P21281 511 aa13.71□□□□□ -0.21
TRIM28-207ENST00000597136 CASP3P42574 277 aa13.71□□□□□ -0.21
TRIM28-207ENST00000597136 CRYBA2P53672 197 aa13.71□□□□□ -0.21
TRIM28-207ENST00000597136 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.71□□□□□ -0.21
TRIM28-207ENST00000597136 PATL1Q86TB9 770 aaKnown RBP13.71□□□□□ -0.21
TRIM28-207ENST00000597136 SPPL2CQ8IUH8 684 aa13.71□□□□□ -0.21
TRIM28-207ENST00000597136 SPPL2AQ8TCT8 520 aa13.71□□□□□ -0.21
TRIM28-207ENST00000597136 FAR1Q8WVX9 515 aa13.71□□□□□ -0.21
TRIM28-207ENST00000597136 ZG16BQ96DA0 208 aa13.71□□□□□ -0.21
TRIM28-207ENST00000597136 COL21A1Q96P44 957 aa13.71□□□□□ -0.21
TRIM28-207ENST00000597136 ZNF607Q96SK3 696 aa13.71□□□□□ -0.21
TRIM28-207ENST00000597136 MRTO4Q9UKD2 239 aaKnown RBP13.71□□□□□ -0.21
TRIM28-207ENST00000597136 SPTBN1Q01082 2364 aaKnown RBP13.71□□□□□ -0.21
TRIM28-207ENST00000597136 PHF3Q92576 2039 aaKnown RBP13.71□□□□□ -0.21
TRIM28-207ENST00000597136 OR6C70A6NIJ9 312 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 C17orf51A8MQB3 221 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 M0QX08 132 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 TP53I11O14683 189 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 KIAA0513O60268 411 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 STAMBPO95630 424 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 CYP4B1P13584 511 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 ATP6V1C1P21283 382 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 PTGDSP41222 190 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 TMED10P49755 219 aaKnown RBP13.71□□□□□ -0.22
TRIM28-207ENST00000597136 PNLIPRP2P54317 469 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 PSMD4P55036 377 aaKnown RBP13.71□□□□□ -0.22
TRIM28-207ENST00000597136 FOXO1Q12778 655 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 KPNB1Q14974 876 aaKnown RBP13.71□□□□□ -0.22
TRIM28-207ENST00000597136 GPR68Q15743 365 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 FLYWCH1Q4VC44 716 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 LRRC23Q53EV4 343 aaPredicted RBP13.71□□□□□ -0.22
TRIM28-207ENST00000597136 FAM180AQ6UWF9 173 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 KRT73Q86Y46 540 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 DND1Q8IYX4 353 aaKnown RBP13.71□□□□□ -0.22
TRIM28-207ENST00000597136 ZNF619Q8N2I2 560 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 BHLHE22Q8NFJ8 381 aaPredicted RBP13.71□□□□□ -0.22
TRIM28-207ENST00000597136 OR52E4Q8NGH9 312 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 PMM1Q92871 262 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 FAM162AQ96A26 154 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 MIB2Q96AX9 1013 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 TAMM41Q96BW9 452 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 NTNG2Q96CW9 530 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 NSMCE2Q96MF7 247 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 DENND2DQ9H6A0 471 aaPredicted RBP13.71□□□□□ -0.22
TRIM28-207ENST00000597136 DCAF13Q9NV06 445 aaKnown RBP13.71□□□□□ -0.22
TRIM28-207ENST00000597136 CNIH4Q9P003 139 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 HRH3Q9Y5N1 445 aa13.71□□□□□ -0.22
TRIM28-207ENST00000597136 GPC6Q9Y625 555 aaPredicted RBP13.71□□□□□ -0.22
TRIM28-207ENST00000597136 USP9XQ93008 2570 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-207ENST00000597136 ZNHIT1O43257 154 aa13.7□□□□□ -0.22
TRIM28-207ENST00000597136 ICOSLGO75144 302 aa13.7□□□□□ -0.22
TRIM28-207ENST00000597136 PDE9AO76083 593 aa13.7□□□□□ -0.22
TRIM28-207ENST00000597136 SERPINA1P01009 418 aa13.7□□□□□ -0.22
TRIM28-207ENST00000597136 IL12BP29460 328 aa13.7□□□□□ -0.22
TRIM28-207ENST00000597136 KRT20P35900 424 aa13.7□□□□□ -0.22
TRIM28-207ENST00000597136 ZFP62Q8NB50 900 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-207ENST00000597136 LRGUKQ96M69 825 aa13.7□□□□□ -0.22
TRIM28-207ENST00000597136 FAM173AQ9BQD7 235 aa13.7□□□□□ -0.22
TRIM28-207ENST00000597136 ANGPTL4Q9BY76 406 aa13.7□□□□□ -0.22
TRIM28-207ENST00000597136 RTN4RQ9BZR6 473 aa13.7□□□□□ -0.22
TRIM28-207ENST00000597136 TRIM15Q9C019 465 aa13.7□□□□□ -0.22
TRIM28-207ENST00000597136 QRSL1Q9H0R6 528 aaKnown RBP13.7□□□□□ -0.22
TRIM28-207ENST00000597136 GALNT9Q9HCQ5 603 aa13.7□□□□□ -0.22
TRIM28-207ENST00000597136 KCNE5Q9UJ90 142 aa13.7□□□□□ -0.22
TRIM28-207ENST00000597136 AGAP5A6NIR3 686 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 FAM166BA8MTA8 275 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 NPIPB9F8W1W9 429 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 ADAM10O14672 748 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 SERPINB7O75635 380 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 MFN2O95140 757 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 IFNA14P01570 189 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 RFPL3SP0C7P2 107 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 PLA2G2AP14555 144 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 LCN1P31025 176 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 ERFP50548 548 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 ACTR3P61158 418 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 DMTNQ08495 405 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 CCNIQ14094 377 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 ELOAQ14241 798 aaKnown RBP13.69□□□□□ -0.22
TRIM28-207ENST00000597136 CYBRD1Q53TN4 286 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 MTX3Q5HYI7 312 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 FNDC7Q5VTL7 733 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 HMGN2P46Q86SG4 172 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 EID3Q8N140 333 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 OR4C3Q8NH37 302 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 NR4A3Q92570 626 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 RSPO3Q9BXY4 272 aaPredicted RBP13.69□□□□□ -0.22
TRIM28-207ENST00000597136 RYDENQ9NUL5 291 aaKnown RBP13.69□□□□□ -0.22
TRIM28-207ENST00000597136 OLAHQ9NV23 265 aa13.69□□□□□ -0.22
TRIM28-207ENST00000597136 MED12LQ86YW9 2145 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms