RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 PPP1R16AQ96I34 528 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 ENKD1Q9H0I2 346 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 PPP1R3EQ9H7J1 279 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 USP36Q9P275 1121 aaKnown RBP14.25□□□□□ -0.13
UPF1-204ENST00000596842 WDR45Q9Y484 360 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 CENPVL1A0A0U1RR11 272 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 E9PI62 339 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 CHST10O43529 356 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 HCN1O60741 890 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 EIF4EP06730 217 aaKnown RBP14.25□□□□□ -0.13
UPF1-204ENST00000596842 HIST1H1TP22492 207 aaPredicted RBP14.25□□□□□ -0.13
UPF1-204ENST00000596842 EPHA5P54756 1037 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 CDK3Q00526 305 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 SNTA1Q13424 505 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 NTRK2Q16620 822 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 CDC73Q6P1J9 531 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 LILRA6Q6PI73 481 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 FBXL6Q8N531 539 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 UXS1Q8NBZ7 420 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 FBXO15Q8NCQ5 510 aaPredicted RBP14.25□□□□□ -0.13
UPF1-204ENST00000596842 ZFAND1Q8TCF1 268 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 GCDHQ92947 438 aaPredicted RBP14.25□□□□□ -0.13
UPF1-204ENST00000596842 HCAR1Q9BXC0 346 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 CHIAQ9BZP6 476 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 SLC38A1Q9H2H9 487 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 ERVMER34-1Q9H9K5 563 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 FBXL4Q9UKA2 621 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 MGAT4AQ9UM21 535 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 SESN1Q9Y6P5 492 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 TRDV1A0A1B0GX56 115 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 PSMD9O00233 223 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 MAN2B1O00754 1011 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 PYCR1P32322 319 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 P2RY2P41231 377 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 AGFG1P52594 562 aaKnown RBP14.24□□□□□ -0.13
UPF1-204ENST00000596842 PGGHGQ32M88 737 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 GPR135Q8IZ08 494 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 PFN4Q8NHR9 129 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 ZNF431Q8TF32 576 aaPredicted RBP14.24□□□□□ -0.13
UPF1-204ENST00000596842 ZNF296Q8WUU4 475 aaPredicted RBP14.24□□□□□ -0.13
UPF1-204ENST00000596842 HMGB4Q8WW32 186 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 OSTF1Q92882 214 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 RFT1Q96AA3 541 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 ACSS1Q9NUB1 689 aaPredicted RBP14.24□□□□□ -0.13
UPF1-204ENST00000596842 SPHK1Q9NYA1 384 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 MLXQ9UH92 298 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 CCR6P51684 374 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 ESCO2Q56NI9 601 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 FIGNL1Q6PIW4 674 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 ACBD7Q8N6N7 88 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 OR52L1Q8NGH7 329 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 SPRTNQ9H040 489 aaPredicted RBP14.24□□□□□ -0.13
UPF1-204ENST00000596842 CYB5R1Q9UHQ9 305 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 ACAD8Q9UKU7 415 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 EDARQ9UNE0 448 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 TRAV27A0A087WT01 109 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 STK25O00506 426 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 SSNA1O43805 119 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 NDUFV2P19404 249 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 ARHGDIBP52566 201 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 REEP5Q00765 189 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 PCDH1Q08174 1060 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 ELAVL3Q14576 367 aaKnown RBP14.24□□□□□ -0.13
UPF1-204ENST00000596842 GDF7Q7Z4P5 450 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 SLC51BQ86UW2 128 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 COMMD7Q86VX2 200 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 NR2C2APQ86WQ0 139 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 AICDAQ9GZX7 198 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 NDOR1Q9UHB4 597 aa14.24□□□□□ -0.13
UPF1-204ENST00000596842 MYO15AQ9UKN7 3530 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 A0A0A6YYJ9 748 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 SLC31A1O15431 190 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 VEGFDO43915 354 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 CLTBP09497 229 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 E2F1Q01094 437 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 PRDX1Q06830 199 aaKnown RBP14.23□□□□□ -0.13
UPF1-204ENST00000596842 HNRNPA1L2Q32P51 320 aaKnown RBP14.23□□□□□ -0.13
UPF1-204ENST00000596842 DEFB134Q4QY38 66 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 ZNF322Q6U7Q0 402 aaPredicted RBP14.23□□□□□ -0.13
UPF1-204ENST00000596842 PRSS45Q7RTY3 260 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 SHISA5Q8N114 240 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 LRIG1Q96JA1 1093 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 PINK1Q9BXM7 581 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 IGKV1-8A0A0C4DH67 115 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 A0A0G2JPF8 293 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 HNRNPCL3B7ZW38 293 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 SURF4O15260 269 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 MID1O15344 667 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 APOC3P02656 99 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 HNRNPCL4P0DMR1 293 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 GIFP27352 417 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 ZNF155Q12901 538 aaPredicted RBP14.23□□□□□ -0.13
UPF1-204ENST00000596842 SF3A2Q15428 464 aaKnown RBP14.23□□□□□ -0.13
UPF1-204ENST00000596842 PSRC1Q6PGN9 363 aaPredicted RBP14.23□□□□□ -0.13
UPF1-204ENST00000596842 TMEM91Q6ZNR0 172 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 IDO2Q6ZQW0 420 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 ZNF671Q8TAW3 534 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 C1QTNF6Q9BXI9 259 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 OR52D1Q9H346 318 aa14.23□□□□□ -0.13
UPF1-204ENST00000596842 EPHX3Q9H6B9 360 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms