RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ZNF141Q15928 474 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 COX20Q5RI15 118 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 LRIF1Q5T3J3 769 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 C1orf185Q5T7R7 199 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 TYW3Q6IPR3 259 aaKnown RBP13.63□□□□□ -0.23
UPF1-202ENST00000594243 CGB2Q6NT52 195 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 ULK2Q8IYT8 1036 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 ZNF614Q8N883 585 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 B4GALNT2Q8NHY0 566 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 RND1Q92730 232 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 PMM1Q92871 262 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 WDYHV1Q96HA8 205 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 ZNF317Q96PQ6 595 aaPredicted RBP13.63□□□□□ -0.23
UPF1-202ENST00000594243 TRNT1Q96Q11 434 aaKnown RBP13.63□□□□□ -0.23
UPF1-202ENST00000594243 PIGQQ9BRB3 760 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 LEF1Q9UJU2 399 aaPredicted RBP13.63□□□□□ -0.23
UPF1-202ENST00000594243 CAMK2AQ9UQM7 478 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 NDUFAF1Q9Y375 327 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 RP1L1Q8IWN7 2480 aaPredicted RBP13.63□□□□□ -0.23
UPF1-202ENST00000594243 NCKAP5O14513 1909 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 TMEM247A6NEH6 219 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 SERINC4A6NH21 518 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 HCRTR2O43614 444 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 GMFGO60234 142 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 C1QCP02747 245 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 NR2F1P10589 423 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 PEPDP12955 493 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 PPIBP23284 216 aaKnown RBP13.62□□□□□ -0.23
UPF1-202ENST00000594243 ADH7P40394 386 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 P2RX1P51575 399 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 ZNF41P51814 821 aaPredicted RBP13.62□□□□□ -0.23
UPF1-202ENST00000594243 MVDP53602 400 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 PMPCAQ10713 525 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 GNA13Q14344 377 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 CD226Q15762 336 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 BCL2A1Q16548 175 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 PAGE3Q5JUK9 113 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.62□□□□□ -0.23
UPF1-202ENST00000594243 PDZK1Q5T2W1 519 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 RAET1LQ5VY80 246 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 LRRC74BQ6ZQY2 392 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 ZNF619Q8N2I2 560 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 ITLN2Q8WWU7 325 aaPredicted RBP13.62□□□□□ -0.23
UPF1-202ENST00000594243 SH3YL1Q96HL8 342 aaPredicted RBP13.62□□□□□ -0.23
UPF1-202ENST00000594243 TTYH2Q9BSA4 534 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 MTHFD2LQ9H903 347 aaPredicted RBP13.62□□□□□ -0.23
UPF1-202ENST00000594243 CALML5Q9NZT1 146 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 STOML1Q9UBI4 398 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 P2RX2Q9UBL9 471 aa13.62□□□□□ -0.23
UPF1-202ENST00000594243 USP9YO00507 2555 aaPredicted RBP13.62□□□□□ -0.23
UPF1-202ENST00000594243 SPTAN1Q13813 2472 aaKnown RBP13.62□□□□□ -0.23
UPF1-202ENST00000594243 ANGPT2O15123 496 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 ZNF264O43296 627 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 KIAA0513O60268 411 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 EIF4E2O60573 245 aaKnown RBP13.61□□□□□ -0.23
UPF1-202ENST00000594243 H6PDO95479 791 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 EPPINO95925 133 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 SNRPB2P08579 225 aaKnown RBP13.61□□□□□ -0.23
UPF1-202ENST00000594243 UBL4AP11441 157 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 ETFAP13804 333 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 TCEA1P23193 301 aaKnown RBP13.61□□□□□ -0.23
UPF1-202ENST00000594243 SUMO3P55854 103 aaPredicted RBP13.61□□□□□ -0.23
UPF1-202ENST00000594243 DSTNP60981 165 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 ZNF117Q03924 483 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 CHRNEQ04844 493 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 SF3A3Q12874 501 aaKnown RBP eCLIP13.61□□□□□ -0.23
UPF1-202ENST00000594243 FADDQ13158 208 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 RGNQ15493 299 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 SYPL1Q16563 259 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 GTDC1Q4AE62 458 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 RTL6Q6ICC9 239 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 ARSKQ6UWY0 536 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 FRRS1Q6ZNA5 592 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 EIF3MQ7L2H7 374 aaKnown RBP13.61□□□□□ -0.23
UPF1-202ENST00000594243 OR10Q1Q8NGQ4 319 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 ZPLD1Q8TCW7 415 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 ZBTB8AQ96BR9 441 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 AURKBQ96GD4 344 aaPredicted RBP13.61□□□□□ -0.23
UPF1-202ENST00000594243 VDAC3Q9Y277 283 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 CARD8Q9Y2G2 431 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 FAM215AQ9Y5M1 114 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 ZGRF1Q86YA3 2104 aa13.61□□□□□ -0.23
UPF1-202ENST00000594243 PRAMEF27A3QJZ7 478 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 EVPLLA8MZ36 301 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 NUDT14O95848 222 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 CSTAP01040 98 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 GLI4P10075 376 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 HOXB9P17482 250 aaPredicted RBP13.6□□□□□ -0.23
UPF1-202ENST00000594243 ADSLP30566 484 aaPredicted RBP13.6□□□□□ -0.23
UPF1-202ENST00000594243 STARP49675 285 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 LHX2P50458 406 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 NUP107P57740 925 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 EEFSECP57772 596 aaKnown RBP13.6□□□□□ -0.23
UPF1-202ENST00000594243 B3GALT5-AS1P59052 145 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 FUT5Q11128 374 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 ART3Q13508 389 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 DCST1Q5T197 706 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 CBLN3Q6UW01 205 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 NCCRP1Q6ZVX7 275 aaPredicted RBP13.6□□□□□ -0.23
UPF1-202ENST00000594243 OLIG3Q7RTU3 272 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms