RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 HOXD1Q9GZZ0 328 aa18.3■□□□□ 0.52
TRIM47-204ENST00000587339 TMEM9BQ9NQ34 198 aa18.3■□□□□ 0.52
TRIM47-204ENST00000587339 UBQLN4Q9NRR5 601 aa18.3■□□□□ 0.52
TRIM47-204ENST00000587339 AASSQ9UDR5 926 aa18.3■□□□□ 0.52
TRIM47-204ENST00000587339 RALGAPA1Q6GYQ0 2036 aa18.3■□□□□ 0.52
TRIM47-204ENST00000587339 CDC14CA4D256 554 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 SERINC4A6NH21 518 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 TRIM64CA6NLI5 447 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 SOX14O95416 240 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 CCDC159P0C7I6 412 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 HPGDP15428 266 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 GPR143P51810 404 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 SPEM2Q0P670 501 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 ILKQ13418 452 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 MRPL14Q6P1L8 145 aaKnown RBP18.29■□□□□ 0.52
TRIM47-204ENST00000587339 DEPDC4Q8N2C3 294 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 ZNF527Q8NB42 609 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 SUMF1Q8NBK3 374 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 B3GNT7Q8NFL0 401 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 PMEPA1Q969W9 287 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 ZNF559Q9BR84 538 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 ZAR1LA6NP61 321 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 CBFA2T3O75081 653 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 CSTAP01040 98 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 GSTM3P21266 225 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 NR0B1P51843 470 aaKnown RBP18.29■□□□□ 0.52
TRIM47-204ENST00000587339 CXCR4P61073 352 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 NADK2Q4G0N4 442 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 TMEM236Q5W0B7 351 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 PIGXQ8TBF5 258 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 TMEM255BQ8WV15 326 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 SLC35B4Q969S0 331 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 ZNF566Q969W8 418 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 LRFN5Q96NI6 719 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 GPA33Q99795 319 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 MESP1Q9BRJ9 268 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 FAM192AQ9GZU8 254 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 TMEM27Q9HBJ8 222 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 IMPAD1Q9NX62 359 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 RNF6Q9Y252 685 aa18.29■□□□□ 0.52
TRIM47-204ENST00000587339 SAGE2PA6NJ88 616 aa18.28■□□□□ 0.52
TRIM47-204ENST00000587339 PRR33A8MZF0 331 aa18.28■□□□□ 0.52
TRIM47-204ENST00000587339 B4E171 279 aa18.28■□□□□ 0.52
TRIM47-204ENST00000587339 NTN1O95631 604 aa18.28■□□□□ 0.52
TRIM47-204ENST00000587339 FMO3P31513 532 aa18.28■□□□□ 0.52
TRIM47-204ENST00000587339 TSPAN7P41732 249 aa18.28■□□□□ 0.52
TRIM47-204ENST00000587339 CDC42P60953 191 aa18.28■□□□□ 0.52
TRIM47-204ENST00000587339 KLHL26Q53HC5 615 aa18.28■□□□□ 0.52
TRIM47-204ENST00000587339 FAM199XQ6PEV8 388 aaPredicted RBP18.28■□□□□ 0.52
TRIM47-204ENST00000587339 ZNF613Q6PF04 617 aa18.28■□□□□ 0.52
TRIM47-204ENST00000587339 MBOAT2Q6ZWT7 520 aa18.28■□□□□ 0.52
TRIM47-204ENST00000587339 ZNF550Q7Z398 422 aa18.28■□□□□ 0.52
TRIM47-204ENST00000587339 PRICKLE2Q7Z3G6 844 aa18.28■□□□□ 0.52
TRIM47-204ENST00000587339 PRR22Q8IZ63 422 aa18.28■□□□□ 0.52
TRIM47-204ENST00000587339 RNF217Q8TC41 542 aa18.28■□□□□ 0.52
TRIM47-204ENST00000587339 OIT3Q8WWZ8 545 aa18.28■□□□□ 0.52
TRIM47-204ENST00000587339 ADOQ96SZ5 270 aa18.28■□□□□ 0.52
TRIM47-204ENST00000587339 WDR54Q9H977 334 aa18.28■□□□□ 0.52
TRIM47-204ENST00000587339 GPN3Q9UHW5 284 aaPredicted RBP18.28■□□□□ 0.52
TRIM47-204ENST00000587339 NXT1Q9UKK6 140 aaKnown RBP18.28■□□□□ 0.52
TRIM47-204ENST00000587339 TO15178 435 aa18.27■□□□□ 0.52
TRIM47-204ENST00000587339 XPNPEP2O43895 674 aa18.27■□□□□ 0.52
TRIM47-204ENST00000587339 ABCB7O75027 752 aa18.27■□□□□ 0.52
TRIM47-204ENST00000587339 LINGO3P0C6S8 592 aa18.27■□□□□ 0.52
TRIM47-204ENST00000587339 ITIH1P19827 911 aa18.27■□□□□ 0.52
TRIM47-204ENST00000587339 KRT20P35900 424 aa18.27■□□□□ 0.52
TRIM47-204ENST00000587339 GABARAPL2P60520 117 aa18.27■□□□□ 0.52
TRIM47-204ENST00000587339 NRMQ8IXM6 262 aa18.27■□□□□ 0.52
TRIM47-204ENST00000587339 C17orf47Q8NEP4 570 aa18.27■□□□□ 0.52
TRIM47-204ENST00000587339 GNPDA2Q8TDQ7 276 aa18.27■□□□□ 0.52
TRIM47-204ENST00000587339 MR1Q95460 341 aa18.27■□□□□ 0.52
TRIM47-204ENST00000587339 ARSGQ96EG1 525 aa18.27■□□□□ 0.52
TRIM47-204ENST00000587339 LPAR4Q99677 370 aa18.27■□□□□ 0.52
TRIM47-204ENST00000587339 PRSS27Q9BQR3 290 aa18.27■□□□□ 0.52
TRIM47-204ENST00000587339 STRADBQ9C0K7 418 aa18.27■□□□□ 0.52
TRIM47-204ENST00000587339 SLC35A3Q9Y2D2 325 aa18.27■□□□□ 0.52
TRIM47-204ENST00000587339 PTGES3LE9PB15 166 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 SCDO00767 359 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 ADAM11O75078 769 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 REM1O75628 298 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 UTS2O95399 124 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 CYC1P08574 325 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 IL12BP29460 328 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 ACAA2P42765 397 aaKnown RBP18.27■□□□□ 0.51
TRIM47-204ENST00000587339 OMPP47874 163 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 E2F1Q01094 437 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 ALDH6A1Q02252 535 aaKnown RBP18.27■□□□□ 0.51
TRIM47-204ENST00000587339 BROXQ5VW32 411 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 FOXB2Q5VYV0 432 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 PAPD4Q6PIY7 484 aaKnown RBP18.27■□□□□ 0.51
TRIM47-204ENST00000587339 ZNF773Q6PK81 442 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 CPEB2Q7Z5Q1 589 aaKnown RBP18.27■□□□□ 0.51
TRIM47-204ENST00000587339 P3H2Q8IVL5 708 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 APCDD1LQ8NCL9 501 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 RHOXF1Q8NHV9 184 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 HSPBAP1Q96EW2 488 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 FAM46AQ96IP4 442 aaKnown RBP18.27■□□□□ 0.51
TRIM47-204ENST00000587339 SEMA4CQ9C0C4 833 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 KRCC1Q9NPI7 259 aaPredicted RBP18.27■□□□□ 0.51
TRIM47-204ENST00000587339 SCN3BQ9NY72 215 aa18.27■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms