RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 CT45A9P0DMV2 189 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 ZNF26P17031 533 aaPredicted RBP5.71□□□□□ -1.5
LIG3-206ENST00000586058 S1PR1P21453 382 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 ELAVL4P26378 380 aaKnown RBP5.71□□□□□ -1.5
LIG3-206ENST00000586058 ETV5P41161 510 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 CASRP41180 1078 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 MAP3K8P41279 467 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 GPR143P51810 404 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 CRYBA2P53672 197 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 NUP107P57740 925 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 CDC42P60953 191 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 EEF1A1P68104 462 aaKnown RBP5.71□□□□□ -1.5
LIG3-206ENST00000586058 PPP2R2BQ00005 443 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 CBFBQ13951 182 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 DGCR6Q14129 220 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 SSPNQ14714 243 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 PDK3Q15120 406 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 ZNF141Q15928 474 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 CT45A2Q5DJT8 189 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 ENTPD8Q5MY95 495 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 EXOSC6Q5RKV6 272 aaKnown RBP5.71□□□□□ -1.5
LIG3-206ENST00000586058 C6orf52Q5T4I8 152 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 FAM69BQ5VUD6 431 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 RPL13AP3Q6NVV1 102 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 FAM199XQ6PEV8 388 aaPredicted RBP5.71□□□□□ -1.5
LIG3-206ENST00000586058 ZNF613Q6PF04 617 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 TTC33Q6PID6 262 aaPredicted RBP5.71□□□□□ -1.5
LIG3-206ENST00000586058 OPN5Q6U736 354 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 NPSR1Q6W5P4 371 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 NDUFAF7Q7L592 441 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 HMGN2P46Q86SG4 172 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 GRAMD2AQ8IUY3 354 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 PRR22Q8IZ63 422 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 DEPDC4Q8N2C3 294 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 SLC15A4Q8N697 577 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 SIMC1Q8NDZ2 872 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 GPR32P1Q8NGA4 272 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 OR52L1Q8NGH7 329 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 OR6T1Q8NGN1 323 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 TEX47Q8TBZ9 253 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 M1APQ8TC57 530 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 ADAMTS16Q8TE57 1224 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 CT55Q8WUE5 264 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 ASB15Q8WXK1 588 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 SLC41A3Q96GZ6 507 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 MPP4Q96JB8 637 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 HS6ST2Q96MM7 605 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 CCNL2Q96S94 520 aaPredicted RBP5.71□□□□□ -1.5
LIG3-206ENST00000586058 ADOQ96SZ5 270 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 PSD2Q9BQI7 771 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 SEMA4CQ9C0C4 833 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 METTL7AQ9H8H3 244 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 NMNAT1Q9HAN9 279 aaPredicted RBP5.71□□□□□ -1.5
LIG3-206ENST00000586058 VCX3AQ9NNX9 186 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 SLC22A11Q9NSA0 550 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 IMPAD1Q9NX62 359 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 KLRF1Q9NZS2 232 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 RHCGQ9UBD6 479 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 TCFL5Q9UL49 500 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 FARSAQ9Y285 508 aaKnown RBP5.71□□□□□ -1.5
LIG3-206ENST00000586058 CLDN16Q9Y5I7 305 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 GMPPBQ9Y5P6 360 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 NPFFR2Q9Y5X5 522 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 LOC102723996A0A087X1L8 192 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 TEX51A0A1B0GUA7 166 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 CDC14CA4D256 554 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 OR6C70A6NIJ9 312 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 ELOA3DA6NLF2 546 aaPredicted RBP5.7□□□□□ -1.5
LIG3-206ENST00000586058 C9orf172C9J069 976 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 J3KTA2 159 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 M0R3G1 203 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 FRS3O43559 492 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 CHP2O43745 196 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 MPZL2O60487 215 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 EIF4E2O60573 245 aaKnown RBP5.7□□□□□ -1.5
LIG3-206ENST00000586058 TPST2O60704 377 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 PPM1BO75688 479 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 SNAP29O95721 258 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 HPP00738 406 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 CLPSP04118 112 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 CAPNS1P04632 268 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 NGFRP08138 427 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 LINGO3P0C6S8 592 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 ITGAMP11215 1152 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 CYP4B1P13584 511 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 NAGAP17050 411 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 PGCP20142 388 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 TBXA2RP21731 343 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 ITPKBP27987 946 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 ABCD3P28288 659 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 STAT5AP42229 794 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 RBM34P42696 430 aaKnown RBP5.7□□□□□ -1.5
LIG3-206ENST00000586058 SSR4P51571 173 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 ZNF41P51814 821 aaPredicted RBP5.7□□□□□ -1.5
LIG3-206ENST00000586058 CHN2P52757 468 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 IST1P53990 364 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 RRADP55042 308 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 ESRRGP62508 458 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 IL5RAQ01344 420 aa5.7□□□□□ -1.5
LIG3-206ENST00000586058 FOXD4Q12950 439 aaPredicted RBP5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms