RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 NEURL3Q96EH8 262 aa17.67■□□□□ 0.42
SS18-209ENST00000578595 WDYHV1Q96HA8 205 aa17.67■□□□□ 0.42
SS18-209ENST00000578595 NAV2Q8IVL1 2488 aa17.66■□□□□ 0.42
SS18-209ENST00000578595 FAM234BA2RU67 622 aa17.66■□□□□ 0.42
SS18-209ENST00000578595 SHISA8B8ZZ34 492 aa17.66■□□□□ 0.42
SS18-209ENST00000578595 NR5A2O00482 541 aa17.66■□□□□ 0.42
SS18-209ENST00000578595 SEC14L5O43304 696 aa17.66■□□□□ 0.42
SS18-209ENST00000578595 STX11O75558 287 aa17.66■□□□□ 0.42
SS18-209ENST00000578595 CYP7B1O75881 506 aa17.66■□□□□ 0.42
SS18-209ENST00000578595 NCF2P19878 526 aaPredicted RBP17.66■□□□□ 0.42
SS18-209ENST00000578595 ZFP36L2P47974 494 aaKnown RBP17.66■□□□□ 0.42
SS18-209ENST00000578595 ATP12AP54707 1039 aa17.66■□□□□ 0.42
SS18-209ENST00000578595 GFRA1P56159 465 aa17.66■□□□□ 0.42
SS18-209ENST00000578595 CD226Q15762 336 aa17.66■□□□□ 0.42
SS18-209ENST00000578595 SP5Q6BEB4 398 aaPredicted RBP17.66■□□□□ 0.42
SS18-209ENST00000578595 LACC1Q8IV20 430 aa17.66■□□□□ 0.42
SS18-209ENST00000578595 GOT1L1Q8NHS2 421 aaPredicted RBP17.66■□□□□ 0.42
SS18-209ENST00000578595 B4GALNT2Q8NHY0 566 aa17.66■□□□□ 0.42
SS18-209ENST00000578595 ITCHQ96J02 903 aa17.66■□□□□ 0.42
SS18-209ENST00000578595 SDF2Q99470 211 aa17.66■□□□□ 0.42
SS18-209ENST00000578595 PIGQQ9BRB3 760 aa17.66■□□□□ 0.42
SS18-209ENST00000578595 CHST11Q9NPF2 352 aa17.66■□□□□ 0.42
SS18-209ENST00000578595 CCDC167Q9P0B6 97 aa17.66■□□□□ 0.42
SS18-209ENST00000578595 MKLN1Q9UL63 735 aa17.66■□□□□ 0.42
SS18-209ENST00000578595 UNC79Q9P2D8 2635 aa17.66■□□□□ 0.42
SS18-209ENST00000578595 A0A0G2JND7 137 aa17.65■□□□□ 0.42
SS18-209ENST00000578595 A0A0G2JNJ9 132 aa17.65■□□□□ 0.42
SS18-209ENST00000578595 A0A1W2PQD3 144 aa17.65■□□□□ 0.42
SS18-209ENST00000578595 NKX2-6A6NCS4 301 aa17.65■□□□□ 0.42
SS18-209ENST00000578595 ZIC3O60481 467 aa17.65■□□□□ 0.42
SS18-209ENST00000578595 EDF1O60869 148 aaKnown RBP17.65■□□□□ 0.42
SS18-209ENST00000578595 TNFRSF21O75509 655 aa17.65■□□□□ 0.42
SS18-209ENST00000578595 CHMP24386 653 aa17.65■□□□□ 0.42
SS18-209ENST00000578595 MSX1P28360 303 aa17.65■□□□□ 0.42
SS18-209ENST00000578595 ADH7P40394 386 aa17.65■□□□□ 0.42
SS18-209ENST00000578595 ARHGAP11BQ3KRB8 267 aa17.65■□□□□ 0.42
SS18-209ENST00000578595 PDZK1Q5T2W1 519 aa17.65■□□□□ 0.42
SS18-209ENST00000578595 PPP4R4Q6NUP7 873 aa17.65■□□□□ 0.42
SS18-209ENST00000578595 ARSKQ6UWY0 536 aa17.65■□□□□ 0.42
SS18-209ENST00000578595 MEIOBQ8N635 442 aa17.65■□□□□ 0.42
SS18-209ENST00000578595 TUBA1CQ9BQE3 449 aa17.65■□□□□ 0.42
SS18-209ENST00000578595 Q9UFV3 132 aa17.65■□□□□ 0.42
SS18-209ENST00000578595 MRPS18CQ9Y3D5 142 aaKnown RBP17.65■□□□□ 0.42
SS18-209ENST00000578595 WDR45Q9Y484 360 aa17.65■□□□□ 0.42
SS18-209ENST00000578595 OR2M5A3KFT3 312 aa17.64■□□□□ 0.41
SS18-209ENST00000578595 KDM4EB2RXH2 506 aaPredicted RBP17.64■□□□□ 0.41
SS18-209ENST00000578595 KRT75O95678 551 aa17.64■□□□□ 0.41
SS18-209ENST00000578595 IL2RAP01589 272 aa17.64■□□□□ 0.41
SS18-209ENST00000578595 PEPDP12955 493 aa17.64■□□□□ 0.41
SS18-209ENST00000578595 LHX2P50458 406 aa17.64■□□□□ 0.41
SS18-209ENST00000578595 ZNF117Q03924 483 aa17.64■□□□□ 0.41
SS18-209ENST00000578595 SF3A3Q12874 501 aaKnown RBP eCLIP17.64■□□□□ 0.41
SS18-209ENST00000578595 NDUFAF6Q330K2 333 aa17.64■□□□□ 0.41
SS18-209ENST00000578595 AGKQ53H12 422 aa17.64■□□□□ 0.41
SS18-209ENST00000578595 RIPPLY2Q5TAB7 128 aa17.64■□□□□ 0.41
SS18-209ENST00000578595 P4HA3Q7Z4N8 544 aa17.64■□□□□ 0.41
SS18-209ENST00000578595 MTERF4Q7Z6M4 381 aaKnown RBP17.64■□□□□ 0.41
SS18-209ENST00000578595 CHDHQ8NE62 594 aaPredicted RBP17.64■□□□□ 0.41
SS18-209ENST00000578595 MIPOL1Q8TD10 442 aa17.64■□□□□ 0.41
SS18-209ENST00000578595 ROPN1LQ96C74 230 aa17.64■□□□□ 0.41
SS18-209ENST00000578595 UCK2Q9BZX2 261 aa17.64■□□□□ 0.41
SS18-209ENST00000578595 KCNJ16Q9NPI9 418 aa17.64■□□□□ 0.41
SS18-209ENST00000578595 MED4Q9NPJ6 270 aa17.64■□□□□ 0.41
SS18-209ENST00000578595 CARD8Q9Y2G2 431 aa17.64■□□□□ 0.41
SS18-209ENST00000578595 DTNAQ9Y4J8 743 aa17.64■□□□□ 0.41
SS18-209ENST00000578595 IGLV3-32A0A0A0MS00 114 aa17.63■□□□□ 0.41
SS18-209ENST00000578595 HSPB2A8KAH6 182 aa17.63■□□□□ 0.41
SS18-209ENST00000578595 EPPINO95925 133 aa17.63■□□□□ 0.41
SS18-209ENST00000578595 C1QCP02747 245 aa17.63■□□□□ 0.41
SS18-209ENST00000578595 VIMP08670 466 aaKnown RBP17.63■□□□□ 0.41
SS18-209ENST00000578595 TROVE2P10155 538 aaKnown RBP eCLIP17.63■□□□□ 0.41
SS18-209ENST00000578595 UBL4AP11441 157 aa17.63■□□□□ 0.41
SS18-209ENST00000578595 COX6B1P14854 86 aa17.63■□□□□ 0.41
SS18-209ENST00000578595 CRATP43155 626 aa17.63■□□□□ 0.41
SS18-209ENST00000578595 B3GALT5-AS1P59052 145 aa17.63■□□□□ 0.41
SS18-209ENST00000578595 SQLEQ14534 574 aa17.63■□□□□ 0.41
SS18-209ENST00000578595 HSPB2Q16082 182 aa17.63■□□□□ 0.41
SS18-209ENST00000578595 GTDC1Q4AE62 458 aa17.63■□□□□ 0.41
SS18-209ENST00000578595 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.63■□□□□ 0.41
SS18-209ENST00000578595 NSUN5P2Q63ZY6 315 aa17.63■□□□□ 0.41
SS18-209ENST00000578595 SLC2A7Q6PXP3 512 aa17.63■□□□□ 0.41
SS18-209ENST00000578595 MSANTD1Q6ZTZ1 278 aa17.63■□□□□ 0.41
SS18-209ENST00000578595 HMGN2P46Q86SG4 172 aa17.63■□□□□ 0.41
SS18-209ENST00000578595 GRAMD2AQ8IUY3 354 aa17.63■□□□□ 0.41
SS18-209ENST00000578595 TNIP2Q8NFZ5 429 aa17.63■□□□□ 0.41
SS18-209ENST00000578595 TRIM33Q9UPN9 1127 aa17.63■□□□□ 0.41
SS18-209ENST00000578595 ZNF337Q9Y3M9 751 aa17.63■□□□□ 0.41
SS18-209ENST00000578595 A0A087WZY1 265 aa17.62■□□□□ 0.41
SS18-209ENST00000578595 CLCA1A8K7I4 914 aa17.62■□□□□ 0.41
SS18-209ENST00000578595 HMGN4O00479 90 aa17.62■□□□□ 0.41
SS18-209ENST00000578595 FCMRO60667 390 aa17.62■□□□□ 0.41
SS18-209ENST00000578595 CPN1P15169 458 aa17.62■□□□□ 0.41
SS18-209ENST00000578595 ZNF708P17019 499 aa17.62■□□□□ 0.41
SS18-209ENST00000578595 BMP5P22003 454 aa17.62■□□□□ 0.41
SS18-209ENST00000578595 CLDN18P56856 261 aa17.62■□□□□ 0.41
SS18-209ENST00000578595 KLHL26Q53HC5 615 aa17.62■□□□□ 0.41
SS18-209ENST00000578595 COX20Q5RI15 118 aa17.62■□□□□ 0.41
SS18-209ENST00000578595 PLXDC2Q6UX71 529 aa17.62■□□□□ 0.41
SS18-209ENST00000578595 ZNF619Q8N2I2 560 aa17.62■□□□□ 0.41
SS18-209ENST00000578595 LILRB4Q8NHJ6 448 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms