RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 PCDH17O14917 1159 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 ACOX3O15254 700 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 HS6ST1O60243 411 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 PRAMEF2O60811 474 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 GCM2O75603 506 aaPredicted RBP9.37□□□□□ -0.91
SS18-207ENST00000577636 CDC123O75794 336 aaPredicted RBP9.37□□□□□ -0.91
SS18-207ENST00000577636 MFN2O95140 757 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 H6PDO95479 791 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 FESP07332 822 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 THRBP10828 461 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 RHCEP18577 417 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 RRM2P31350 389 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 KCNJ5P48544 419 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 TDGF1P3P51864 188 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 CHN2P52757 468 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 SNRPNP63162 240 aaKnown RBP9.37□□□□□ -0.91
SS18-207ENST00000577636 SPIBQ01892 262 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 MERTKQ12866 999 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 LARS2Q15031 903 aaKnown RBP9.37□□□□□ -0.91
SS18-207ENST00000577636 PRICKLE4Q2TBC4 344 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 MINDY4Q4G0A6 757 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 TRMT12Q53H54 448 aaKnown RBP9.37□□□□□ -0.91
SS18-207ENST00000577636 ZNF311Q5JNZ3 666 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 TTC23Q5W5X9 447 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 ZNF324BQ6AW86 544 aaPredicted RBP9.37□□□□□ -0.91
SS18-207ENST00000577636 FAAH2Q6GMR7 532 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 FAM111BQ6SJ93 734 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 COX15Q7KZN9 410 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 EPHX4Q8IUS5 362 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 PEX5LQ8IYB4 626 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 MARVELD2Q8N4S9 558 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 ATG16L2Q8NAA4 619 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 TMEM52Q8NDY8 209 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 PIK3C3Q8NEB9 887 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 BRIX1Q8TDN6 353 aaKnown RBP9.37□□□□□ -0.91
SS18-207ENST00000577636 GPR151Q8TDV0 419 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 PHF10Q8WUB8 498 aaKnown RBP9.37□□□□□ -0.91
SS18-207ENST00000577636 NACC2Q96BF6 587 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 ART5Q96L15 291 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 PTCHD1Q96NR3 888 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 ZNF300Q96RE9 604 aaPredicted RBP9.37□□□□□ -0.91
SS18-207ENST00000577636 STACQ99469 402 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 SPSB2Q99619 263 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 SERHL2Q9H4I8 314 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 MTHFD2LQ9H903 347 aaPredicted RBP9.37□□□□□ -0.91
SS18-207ENST00000577636 ZNF556Q9HAH1 456 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 CXorf21Q9HAI6 301 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 MKKSQ9NPJ1 570 aaPredicted RBP9.37□□□□□ -0.91
SS18-207ENST00000577636 POLE3Q9NRF9 147 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 DUSP22Q9NRW4 184 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 USE1Q9NZ43 259 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 MAT2BQ9NZL9 334 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 ENOPH1Q9UHY7 261 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 ABCG2Q9UNQ0 655 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 CFL2Q9Y281 166 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 ENPP4Q9Y6X5 453 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 U3KQV3 271 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 ANKRD17O75179 2603 aaKnown RBP9.37□□□□□ -0.91
SS18-207ENST00000577636 POLQO75417 2590 aa9.37□□□□□ -0.91
SS18-207ENST00000577636 HEATR5BQ9P2D3 2071 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 CNTRLQ7Z7A1 2325 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 NSG1A0A0A6YYJ2 146 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 TRAV17A0A0B4J275 112 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 MYOCOSA0A1B0GUC4 107 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 A8MVJ9 347 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 STX11O75558 287 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 TNFAIP8O95379 198 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 HPP00738 406 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 ALPLP05186 524 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 MAOAP21397 527 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 MST1P26927 711 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 CAPGP40121 348 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 OR1E2P47887 323 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 MAN2A2P49641 1150 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 CASP6P55212 293 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 KRTAP10-9P60411 292 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 POU6F2P78424 691 aaPredicted RBP9.36□□□□□ -0.91
SS18-207ENST00000577636 IGLV3-21P80748 117 aaPredicted RBP9.36□□□□□ -0.91
SS18-207ENST00000577636 OCA2Q04671 838 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 RBPJQ06330 500 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 ZNF267Q14586 743 aaPredicted RBP9.36□□□□□ -0.91
SS18-207ENST00000577636 SYT16Q17RD7 645 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 ARHGAP11BQ3KRB8 267 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 EIPR1Q53HC9 387 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 NHSL2Q5HYW2 709 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 HEPHL1Q6MZM0 1159 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 MTFR2Q6P444 385 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 CARM1Q86X55 608 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 ZNF295-AS1Q8N0V1 137 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 SLC16A11Q8NCK7 471 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 OR52R1Q8NGF1 315 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 TFAP2CQ92754 450 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 CDS1Q92903 461 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 GIMAP5Q96F15 307 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 OTUB1Q96FW1 271 aaPredicted RBP9.36□□□□□ -0.91
SS18-207ENST00000577636 SLC35A4Q96G79 324 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 C7orf34Q96L11 122 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 CNPPD1Q9BV87 410 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 PINK1Q9BXM7 581 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms