RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 NEURL2Q9BR09 285 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 LAT2Q9GZY6 243 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 CSTL1Q9H114 145 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 EBF3Q9H4W6 596 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 DHX33Q9H6R0 707 aaKnown RBP5.11□□□□□ -1.59
VPS53-219ENST00000576019 EXOC1Q9NV70 894 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 TMEM30AQ9NV96 361 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 ZNHIT6Q9NWK9 470 aaKnown RBP5.11□□□□□ -1.59
VPS53-219ENST00000576019 SMPD4Q9NXE4 827 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 ZNF319Q9P2F9 582 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 C11orf21Q9P2W6 132 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 AGO1Q9UL18 857 aaKnown RBP5.11□□□□□ -1.59
VPS53-219ENST00000576019 SATB2Q9UPW6 733 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 KLF2Q9Y5W3 355 aaPredicted RBP5.11□□□□□ -1.59
VPS53-219ENST00000576019 NCANO14594 1321 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 CEP192Q8TEP8 1941 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 ZFC3H1O60293 1989 aaKnown RBP5.11□□□□□ -1.59
VPS53-219ENST00000576019 ARID1BQ8NFD5 2236 aaPredicted RBP5.11□□□□□ -1.59
VPS53-219ENST00000576019 LOC105371242A0A075B767 164 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 BTBD17A6NE02 478 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 SERINC4A6NH21 518 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 LRRC30A6NM36 301 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 E9PMD0 336 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 SGK494L7N484 410 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 ABCD4O14678 606 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 RNF13O43567 381 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 SPOPO43791 374 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 LCMT2O60294 686 aaKnown RBP5.1□□□□□ -1.59
VPS53-219ENST00000576019 BCAR3O75815 825 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 ATP1B1P05026 303 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 GSTT2P0CG29 244 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 GSTT2BP0CG30 244 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 CALML3P27482 149 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 EPHA2P29317 976 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 CDC25AP30304 524 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 ALDH3B1P43353 468 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 CRYBB1P53674 252 aaPredicted RBP5.1□□□□□ -1.59
VPS53-219ENST00000576019 PPIAP62937 165 aaKnown RBP5.1□□□□□ -1.59
VPS53-219ENST00000576019 ZNF155Q12901 538 aaPredicted RBP5.1□□□□□ -1.59
VPS53-219ENST00000576019 GPS2Q13227 327 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 KRTAP19-4Q3LI73 84 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 ASPRV1Q53RT3 343 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 DCAF10Q5QP82 559 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 TMEM225Q6GV28 225 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 FAM122CQ6P4D5 195 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 CWC27Q6UX04 472 aaKnown RBP5.1□□□□□ -1.59
VPS53-219ENST00000576019 GFRALQ6UXV0 394 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 ANO5Q75V66 913 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 ZNF554Q86TJ5 538 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 TMEM219Q86XT9 240 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 C1QL4Q86Z23 238 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 MFSD6LQ8IWD5 586 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 TSTD1Q8NFU3 115 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 SMPDL3AQ92484 453 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 IFT74Q96LB3 600 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 C4orf45Q96LM5 186 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 OR1F2PQ96R84 312 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 PANX1Q96RD7 426 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 ERGIC2Q96RQ1 377 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 C11orf70Q9BRQ4 267 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 SIKE1Q9BRV8 207 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 SLC25A33Q9BSK2 321 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 OR2B2Q9GZK3 357 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 BICC1Q9H694 974 aaKnown RBP5.1□□□□□ -1.59
VPS53-219ENST00000576019 ASCL3Q9NQ33 180 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 FANCIQ9NVI1 1328 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 LCMT1Q9UIC8 334 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 SLC7A7Q9UM01 511 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 KLHDC2Q9Y2U9 406 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 ZNF175Q9Y473 711 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 INSL5Q9Y5Q6 135 aa5.1□□□□□ -1.59
VPS53-219ENST00000576019 ABCB11O95342 1321 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 TRBV5-5A0A0J9YX44 114 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 MTMR11A4FU01 709 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 TMEM191CA6NGB0 347 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 PCP4L1A6NKN8 68 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 A8MVM7 634 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 H3BMH7 237 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 GOLGA8SH3BPF8 625 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 CLDN5O00501 218 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 ARPC1BO15143 372 aaKnown RBP5.09□□□□□ -1.59
VPS53-219ENST00000576019 CCL16O15467 120 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 DFNA5O60443 496 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 GAGE7O76087 117 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 VTNP04004 478 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 RHOXF2BP0C7M4 288 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 TMEM191BP0C7N4 346 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 GAGE12FP0CL80 117 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 GAGE12GP0CL81 117 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 GAGE12IP0CL82 117 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 DBTP11182 482 aaKnown RBP5.09□□□□□ -1.59
VPS53-219ENST00000576019 NCK1P16333 377 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 MSH3P20585 1137 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 MAKP20794 623 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 CA4P22748 312 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 HTR5AP47898 357 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 PTH2RP49190 550 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 AP3M2P53677 418 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 ENPEPQ07075 957 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 EFEMP1Q12805 493 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms