RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 DMGDHQ9UI17 866 aaKnown RBP15.83■□□□□ 0.12
CLK3-227ENST00000570296 WBP11Q9Y2W2 641 aaKnown RBP15.83■□□□□ 0.12
CLK3-227ENST00000570296 ANGPTL3Q9Y5C1 460 aa15.83■□□□□ 0.12
CLK3-227ENST00000570296 PLOD3O60568 738 aa15.82■□□□□ 0.12
CLK3-227ENST00000570296 EPHA1P21709 976 aa15.82■□□□□ 0.12
CLK3-227ENST00000570296 MANFP55145 182 aaKnown RBP15.82■□□□□ 0.12
CLK3-227ENST00000570296 CHRNEQ04844 493 aa15.82■□□□□ 0.12
CLK3-227ENST00000570296 MGAT5Q09328 741 aa15.82■□□□□ 0.12
CLK3-227ENST00000570296 PLPPR5Q32ZL2 321 aa15.82■□□□□ 0.12
CLK3-227ENST00000570296 SH2D4BQ5SQS7 431 aa15.82■□□□□ 0.12
CLK3-227ENST00000570296 FAM180BQ6P0A1 224 aa15.82■□□□□ 0.12
CLK3-227ENST00000570296 SLC46A3Q7Z3Q1 461 aa15.82■□□□□ 0.12
CLK3-227ENST00000570296 VRK1Q99986 396 aaPredicted RBP15.82■□□□□ 0.12
CLK3-227ENST00000570296 DESI2Q9BSY9 194 aa15.82■□□□□ 0.12
CLK3-227ENST00000570296 FAIM2Q9BWQ8 316 aa15.82■□□□□ 0.12
CLK3-227ENST00000570296 MRPL1Q9BYD6 325 aaKnown RBP15.82■□□□□ 0.12
CLK3-227ENST00000570296 NTMQ9P121 344 aa15.82■□□□□ 0.12
CLK3-227ENST00000570296 KLHL9Q9P2J3 617 aa15.82■□□□□ 0.12
CLK3-227ENST00000570296 MRTO4Q9UKD2 239 aaKnown RBP15.82■□□□□ 0.12
CLK3-227ENST00000570296 A0A1W2PRB8 838 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 RGS14O43566 566 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 LTA4HP09960 611 aaKnown RBP15.81■□□□□ 0.12
CLK3-227ENST00000570296 CTAGE8P0CG41 777 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 HKR1P10072 659 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 ZNF41P51814 821 aaPredicted RBP15.81■□□□□ 0.12
CLK3-227ENST00000570296 PSMD4P55036 377 aaKnown RBP15.81■□□□□ 0.12
CLK3-227ENST00000570296 ZNF155Q12901 538 aaPredicted RBP15.81■□□□□ 0.12
CLK3-227ENST00000570296 CTAGE4Q8IX94 777 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 CCDC116Q8IYX3 515 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 METTL4Q8N3J2 472 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 TEX29Q8N6K0 151 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 CDYL2Q8N8U2 506 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 L3MBTL4Q8NA19 623 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 OR9A2Q8NGT5 310 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 ACTRT2Q8TDY3 377 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 MAGOHBQ96A72 148 aaKnown RBP15.81■□□□□ 0.12
CLK3-227ENST00000570296 TM4SF18Q96CE8 201 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 UBXN10Q96LJ8 280 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 SUCNR1Q9BXA5 334 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 CAB39LQ9H9S4 337 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 PFDN4Q9NQP4 134 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 MED17Q9NVC6 651 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 NSMCE4AQ9NXX6 385 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 ING1Q9UK53 422 aaPredicted RBP15.81■□□□□ 0.12
CLK3-227ENST00000570296 UTS2RQ9UKP6 389 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 CHMP2BQ9UQN3 213 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 ACOT9Q9Y305 439 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 GRIP1Q9Y3R0 1128 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 PCDHB14Q9Y5E9 798 aa15.81■□□□□ 0.12
CLK3-227ENST00000570296 SUPT3HB4E1H0 165 aa15.8■□□□□ 0.12
CLK3-227ENST00000570296 PHGDHO43175 533 aaKnown RBP15.8■□□□□ 0.12
CLK3-227ENST00000570296 SUPT3HO75486 399 aa15.8■□□□□ 0.12
CLK3-227ENST00000570296 RAD51DO75771 328 aa15.8■□□□□ 0.12
CLK3-227ENST00000570296 UTS2O95399 124 aa15.8■□□□□ 0.12
CLK3-227ENST00000570296 SFTPDP35247 375 aa15.8■□□□□ 0.12
CLK3-227ENST00000570296 ELK3P41970 407 aa15.8■□□□□ 0.12
CLK3-227ENST00000570296 MLC1Q15049 377 aa15.8■□□□□ 0.12
CLK3-227ENST00000570296 APOOLQ6UXV4 268 aa15.8■□□□□ 0.12
CLK3-227ENST00000570296 COMMD6Q7Z4G1 85 aa15.8■□□□□ 0.12
CLK3-227ENST00000570296 SAMD14Q8IZD0 417 aaPredicted RBP15.8■□□□□ 0.12
CLK3-227ENST00000570296 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.8■□□□□ 0.12
CLK3-227ENST00000570296 SLC9A6Q92581 669 aa15.8■□□□□ 0.12
CLK3-227ENST00000570296 PSD2Q9BQI7 771 aa15.8■□□□□ 0.12
CLK3-227ENST00000570296 ALG9Q9H6U8 611 aa15.8■□□□□ 0.12
CLK3-227ENST00000570296 CXorf36Q9H7Y0 433 aa15.8■□□□□ 0.12
CLK3-227ENST00000570296 MED29Q9NX70 200 aa15.8■□□□□ 0.12
CLK3-227ENST00000570296 GJE1A6NN92 205 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 UBXN8O00124 270 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 KERAO60938 352 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 COQ9O75208 318 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 ARAFP10398 606 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 PGCP20142 388 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 EDNRAP25101 427 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 ELK4P28324 431 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 SHC1P29353 583 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 ALDH9A1P49189 494 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 TOR1AIP2Q8NFQ8 470 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 POC1BQ8TC44 478 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 TMEM186Q96B77 213 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 ATOH8Q96SQ7 321 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 TRIM5Q9C035 493 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 Q9N2J8 555 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 HIF1ANQ9NWT6 349 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 GUCA1BQ9UMX6 200 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 MTO1Q9Y2Z2 717 aaKnown RBP15.79■□□□□ 0.12
CLK3-227ENST00000570296 RNF11Q9Y3C5 154 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 PTGDR2Q9Y5Y4 395 aa15.79■□□□□ 0.12
CLK3-227ENST00000570296 CIB4A0PJX0 185 aa15.78■□□□□ 0.12
CLK3-227ENST00000570296 ATP6V1G2-DDX39BF2Z307 99 aa15.78■□□□□ 0.12
CLK3-227ENST00000570296 DAOP14920 347 aa15.78■□□□□ 0.12
CLK3-227ENST00000570296 EIF1P41567 113 aaKnown RBP15.78■□□□□ 0.12
CLK3-227ENST00000570296 KHKP50053 298 aa15.78■□□□□ 0.12
CLK3-227ENST00000570296 PPOXP50336 477 aa15.78■□□□□ 0.12
CLK3-227ENST00000570296 RAB10P61026 200 aa15.78■□□□□ 0.12
CLK3-227ENST00000570296 TRA2BP62995 288 aaKnown RBP15.78■□□□□ 0.12
CLK3-227ENST00000570296 HP1BP3Q5SSJ5 553 aaPredicted RBP15.78■□□□□ 0.12
CLK3-227ENST00000570296 CCDC137Q6PK04 289 aaKnown RBP15.78■□□□□ 0.12
CLK3-227ENST00000570296 THSD4Q6ZMP0 1018 aa15.78■□□□□ 0.12
CLK3-227ENST00000570296 ISCA2Q86U28 154 aa15.78■□□□□ 0.12
CLK3-227ENST00000570296 ZNF100Q8IYN0 542 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms