RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ZNF17P17021 662 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 BMP7P18075 431 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 CASP9P55211 416 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 DSTNP60981 165 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 ADORA2A-AS1P86434 159 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 FADDQ13158 208 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 GNA13Q14344 377 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 GPR68Q15743 365 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 GLYR1Q49A26 553 aaPredicted RBP11.79□□□□□ -0.52
CLK3-224ENST00000568605 EMC4Q5J8M3 183 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 MAMDC2Q7Z304 686 aaPredicted RBP11.79□□□□□ -0.52
CLK3-224ENST00000568605 LACC1Q8IV20 430 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 ULK2Q8IYT8 1036 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 ZNF619Q8N2I2 560 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 B4GALNT2Q8NHY0 566 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 ZFP90Q8TF47 636 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 ITLN2Q8WWU7 325 aaPredicted RBP11.79□□□□□ -0.52
CLK3-224ENST00000568605 ASB5Q8WWX0 329 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 RAB8BQ92930 207 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 ZBTB8AQ96BR9 441 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 TIMP4Q99727 224 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 NSRP1Q9H0G5 558 aaKnown RBP11.79□□□□□ -0.52
CLK3-224ENST00000568605 TPT1P8Q9HAU6 139 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 CACYBPQ9HB71 228 aaKnown RBP11.79□□□□□ -0.52
CLK3-224ENST00000568605 ALKBH4Q9NXW9 302 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 KLHL14Q9P2G3 628 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 HRH3Q9Y5N1 445 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 KCNE3Q9Y6H6 103 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 HECTD1Q9ULT8 2610 aa11.79□□□□□ -0.52
CLK3-224ENST00000568605 A0A1W2PP18 115 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 A1L4Q6 167 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 NPIPB9F8W1W9 429 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 GTPBP1O00178 669 aaKnown RBP11.78□□□□□ -0.52
CLK3-224ENST00000568605 ADAM10O14672 748 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 ZNF264O43296 627 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 TNFRSF21O75509 655 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 RNF224P0DH78 156 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 NR2F1P10589 423 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 UBL4AP11441 157 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 PEPDP12955 493 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 POU3F2P20265 443 aaPredicted RBP11.78□□□□□ -0.52
CLK3-224ENST00000568605 TCEA1P23193 301 aaKnown RBP11.78□□□□□ -0.52
CLK3-224ENST00000568605 CRATP43155 626 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 GFRA1P56159 465 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 MAPRE2Q15555 327 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 PDZK1Q5T2W1 519 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 SLC2A7Q6PXP3 512 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 APOOLQ6UXV4 268 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 MEIOBQ8N635 442 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 TOR1AIP2Q8NFQ8 470 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 CA5BP1Q8WTZ4 195 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 TSPEARQ8WU66 669 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 GTF2H4Q92759 462 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 SH3YL1Q96HL8 342 aaPredicted RBP11.78□□□□□ -0.52
CLK3-224ENST00000568605 PSMG3-AS1Q96PY0 264 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 TRNT1Q96Q11 434 aaKnown RBP11.78□□□□□ -0.52
CLK3-224ENST00000568605 RTN4RQ9BZR6 473 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 PLEKHB1Q9UF11 243 aaPredicted RBP11.78□□□□□ -0.52
CLK3-224ENST00000568605 LEF1Q9UJU2 399 aaPredicted RBP11.78□□□□□ -0.52
CLK3-224ENST00000568605 MKLN1Q9UL63 735 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 VDAC3Q9Y277 283 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 SLC35A3Q9Y2D2 325 aa11.78□□□□□ -0.52
CLK3-224ENST00000568605 RPH3AQ9Y2J0 694 aaPredicted RBP11.78□□□□□ -0.52
CLK3-224ENST00000568605 C7orf72A4D263 438 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 C17orf51A8MQB3 221 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 H3BML4 177 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 GMFGO60234 142 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 EIF4E2O60573 245 aaKnown RBP11.77□□□□□ -0.53
CLK3-224ENST00000568605 H6PDO95479 791 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 CLDN14O95500 239 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 GP1BBP13224 206 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 CPN1P15169 458 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 CAPN3P20807 821 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 CHRNB4P30926 498 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 EIF1P41567 113 aaKnown RBP11.77□□□□□ -0.53
CLK3-224ENST00000568605 P2RX1P51575 399 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 CCR4P51679 360 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 CRISP3P54108 245 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 NUP107P57740 925 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 EEFSECP57772 596 aaKnown RBP11.77□□□□□ -0.53
CLK3-224ENST00000568605 ZNF117Q03924 483 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 FUT5Q11128 374 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 ART3Q13508 389 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 CD226Q15762 336 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 ZNF141Q15928 474 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 BCL2A1Q16548 175 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 ACSF3Q4G176 576 aaPredicted RBP11.77□□□□□ -0.53
CLK3-224ENST00000568605 KLHL26Q53HC5 615 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 DCST1Q5T197 706 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.77□□□□□ -0.53
CLK3-224ENST00000568605 LRIF1Q5T3J3 769 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 TYW3Q6IPR3 259 aaKnown RBP11.77□□□□□ -0.53
CLK3-224ENST00000568605 FRRS1Q6ZNA5 592 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 LRRC74BQ6ZQY2 392 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 EIF3MQ7L2H7 374 aaKnown RBP11.77□□□□□ -0.53
CLK3-224ENST00000568605 CHMP1BQ7LBR1 199 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 FUNDC1Q8IVP5 155 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 OR10Q1Q8NGQ4 319 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 PMM1Q92871 262 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 SDCCAG3Q96C92 435 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 261.8 ms