RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 HSDL2Q6YN16 418 aa18.77■□□□□ 0.6
CLN3-230ENST00000568076 OR2T33Q8NG76 320 aa18.77■□□□□ 0.6
CLN3-230ENST00000568076 VSTM2LQ96N03 204 aa18.77■□□□□ 0.6
CLN3-230ENST00000568076 ASPNQ9BXN1 380 aa18.77■□□□□ 0.6
CLN3-230ENST00000568076 ENKD1Q9H0I2 346 aa18.77■□□□□ 0.6
CLN3-230ENST00000568076 UBQLN3Q9H347 655 aa18.77■□□□□ 0.6
CLN3-230ENST00000568076 SIDT1Q9NXL6 827 aaKnown RBP18.77■□□□□ 0.6
CLN3-230ENST00000568076 STUB1Q9UNE7 303 aa18.77■□□□□ 0.6
CLN3-230ENST00000568076 CFL2Q9Y281 166 aa18.77■□□□□ 0.6
CLN3-230ENST00000568076 TMEM184BQ9Y519 407 aaPredicted RBP18.77■□□□□ 0.6
CLN3-230ENST00000568076 CSNK1G3Q9Y6M4 447 aa18.77■□□□□ 0.6
CLN3-230ENST00000568076 SPTBP11277 2137 aa18.77■□□□□ 0.6
CLN3-230ENST00000568076 IGHV5-51A0A0C4DH38 117 aa18.77■□□□□ 0.59
CLN3-230ENST00000568076 TMEM129A0AVI4 362 aa18.77■□□□□ 0.59
CLN3-230ENST00000568076 KPNA4O00629 521 aaPredicted RBP18.77■□□□□ 0.59
CLN3-230ENST00000568076 NSA2O95478 260 aaKnown RBP18.77■□□□□ 0.59
CLN3-230ENST00000568076 LIMS3P0CW19 117 aa18.77■□□□□ 0.59
CLN3-230ENST00000568076 LIMS4P0CW20 117 aa18.77■□□□□ 0.59
CLN3-230ENST00000568076 MYL12AP19105 171 aa18.77■□□□□ 0.59
CLN3-230ENST00000568076 CD79BP40259 229 aa18.77■□□□□ 0.59
CLN3-230ENST00000568076 RANBP1P43487 201 aa18.77■□□□□ 0.59
CLN3-230ENST00000568076 GCGRP47871 477 aa18.77■□□□□ 0.59
CLN3-230ENST00000568076 WNT4P56705 351 aa18.77■□□□□ 0.59
CLN3-230ENST00000568076 RACK1P63244 317 aaKnown RBP18.77■□□□□ 0.59
CLN3-230ENST00000568076 DEFB133Q30KQ1 61 aa18.77■□□□□ 0.59
CLN3-230ENST00000568076 GDPGP1Q6ZNW5 385 aa18.77■□□□□ 0.59
CLN3-230ENST00000568076 RNF113BQ8IZP6 322 aaKnown RBP18.77■□□□□ 0.59
CLN3-230ENST00000568076 METTL27Q8N6F8 245 aaPredicted RBP18.77■□□□□ 0.59
CLN3-230ENST00000568076 RNF217Q8TC41 542 aa18.77■□□□□ 0.59
CLN3-230ENST00000568076 BRIX1Q8TDN6 353 aaKnown RBP18.77■□□□□ 0.59
CLN3-230ENST00000568076 RBM18Q96H35 190 aaKnown RBP18.77■□□□□ 0.59
CLN3-230ENST00000568076 TGM7Q96PF1 710 aa18.77■□□□□ 0.59
CLN3-230ENST00000568076 MIR1-1HGQ9H1L0 117 aa18.77■□□□□ 0.59
CLN3-230ENST00000568076 OR52D1Q9H346 318 aa18.77■□□□□ 0.59
CLN3-230ENST00000568076 KRCC1Q9NPI7 259 aaPredicted RBP18.77■□□□□ 0.59
CLN3-230ENST00000568076 MED17Q9NVC6 651 aa18.77■□□□□ 0.59
CLN3-230ENST00000568076 HYKKA2RU49 373 aa18.76■□□□□ 0.59
CLN3-230ENST00000568076 IFI30P13284 250 aa18.76■□□□□ 0.59
CLN3-230ENST00000568076 CPEP16870 476 aa18.76■□□□□ 0.59
CLN3-230ENST00000568076 RPS19P39019 145 aaKnown RBP18.76■□□□□ 0.59
CLN3-230ENST00000568076 PRKCDQ05655 676 aa18.76■□□□□ 0.59
CLN3-230ENST00000568076 FAM53BQ14153 422 aa18.76■□□□□ 0.59
CLN3-230ENST00000568076 TRIM16LQ309B1 348 aa18.76■□□□□ 0.59
CLN3-230ENST00000568076 LRIT3Q3SXY7 679 aa18.76■□□□□ 0.59
CLN3-230ENST00000568076 NPSR1Q6W5P4 371 aa18.76■□□□□ 0.59
CLN3-230ENST00000568076 ZNF595Q8IYB9 648 aa18.76■□□□□ 0.59
CLN3-230ENST00000568076 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.76■□□□□ 0.59
CLN3-230ENST00000568076 HINT3Q9NQE9 182 aaKnown RBP18.76■□□□□ 0.59
CLN3-230ENST00000568076 PRTFDC1Q9NRG1 225 aa18.76■□□□□ 0.59
CLN3-230ENST00000568076 FLRT3Q9NZU0 649 aa18.76■□□□□ 0.59
CLN3-230ENST00000568076 CBLCQ9ULV8 474 aa18.76■□□□□ 0.59
CLN3-230ENST00000568076 IRGMA1A4Y4 181 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 FUOMA2VDF0 154 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 TAF4O00268 1085 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 MAOAP21397 527 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 TBXA2RP21731 343 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 MLLT3P42568 568 aaPredicted RBP18.75■□□□□ 0.59
CLN3-230ENST00000568076 FNTBP49356 437 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 ZNF614Q8N883 585 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 OR4F15Q8NGB8 312 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 GATAD2BQ8WXI9 593 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 SPACA7Q96KW9 195 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 BARHL1Q9BZE3 327 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 PRO3102Q9H379 93 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 PLCL2Q9UPR0 1127 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 EXOSC1Q9Y3B2 195 aaKnown RBP18.75■□□□□ 0.59
CLN3-230ENST00000568076 SPIN1Q9Y657 262 aaPredicted RBP18.75■□□□□ 0.59
CLN3-230ENST00000568076 THADAQ6YHU6 1953 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 LRRTM2O43300 516 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 AQP9O43315 295 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 SDC3O75056 442 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 RFPL3O75679 317 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 TGM1P22735 817 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 SOX6P35712 828 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 BNC1Q01954 994 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 ZNF267Q14586 743 aaPredicted RBP18.75■□□□□ 0.59
CLN3-230ENST00000568076 ZNHIT3Q15649 155 aaPredicted RBP18.75■□□□□ 0.59
CLN3-230ENST00000568076 COL13A1Q5TAT6 717 aaPredicted RBP18.75■□□□□ 0.59
CLN3-230ENST00000568076 TUBA3EQ6PEY2 450 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 ZNF485Q8NCK3 441 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 CADM4Q8NFZ8 388 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 FANK1Q8TC84 345 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 GRHL3Q8TE85 626 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 MMABQ96EY8 250 aaPredicted RBP18.75■□□□□ 0.59
CLN3-230ENST00000568076 HS6ST2Q96MM7 605 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 KCNS3Q9BQ31 491 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 TEX12Q9BXU0 123 aa18.75■□□□□ 0.59
CLN3-230ENST00000568076 MEPEQ9NQ76 525 aaPredicted RBP18.75■□□□□ 0.59
CLN3-230ENST00000568076 DNAJB12Q9NXW2 375 aaKnown RBP18.75■□□□□ 0.59
CLN3-230ENST00000568076 MRPS33Q9Y291 106 aaKnown RBP18.75■□□□□ 0.59
CLN3-230ENST00000568076 A0A0B4J2E0 115 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 A0A1B0GX12 115 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 ZNF670-ZNF695F2Z2N8 137 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 BHLHE40O14503 412 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 SOCS6O14544 535 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 HMGN1P05114 100 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 ACAA2P42765 397 aaKnown RBP18.74■□□□□ 0.59
CLN3-230ENST00000568076 GPR3P46089 330 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 SKP1P63208 163 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 RPL6Q02878 288 aaKnown RBP18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms