RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 MISPQ8IVT2 679 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 OR2V1Q8NHB1 315 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 PPP1R14CQ8TAE6 165 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 POC1BQ8TC44 478 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 IGFBPL1Q8WX77 278 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 CCL19Q99731 98 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 KLHL4Q9C0H6 718 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 GLRX2Q9NS18 164 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 SIRT3Q9NTG7 399 aaPredicted RBP15.33■□□□□ 0.04
CLN3-216ENST00000565316 FBXO34Q9NWN3 711 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 MID2Q9UJV3 735 aa15.33■□□□□ 0.04
CLN3-216ENST00000565316 MCTS1Q9ULC4 181 aaKnown RBP15.33■□□□□ 0.04
CLN3-216ENST00000565316 FAM171A2A8MVW0 826 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 HSPA4LO95757 839 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 CHEK2O96017 543 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 HEXAP06865 529 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 ALOX5P09917 674 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 ANKRD34AQ69YU3 496 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 STAC2Q6ZMT1 411 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 ESPNLQ6ZVH7 1005 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 Q71RC1 249 aaPredicted RBP15.32■□□□□ 0.04
CLN3-216ENST00000565316 R3HCC1LQ7Z5L2 792 aaKnown RBP15.32■□□□□ 0.04
CLN3-216ENST00000565316 C4orf33Q8N1A6 199 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 GATSQ8NAP1 163 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 LRRN4CLQ8ND94 238 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 CLHC1Q8NHS4 586 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 FBXO30Q8TB52 745 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 EPS8L3Q8TE67 593 aaKnown RBP15.32■□□□□ 0.04
CLN3-216ENST00000565316 FAM120BQ96EK7 910 aaKnown RBP15.32■□□□□ 0.04
CLN3-216ENST00000565316 ZC3HAV1LQ96H79 300 aaKnown RBP15.32■□□□□ 0.04
CLN3-216ENST00000565316 RNF145Q96MT1 663 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 KLHDC3Q9BQ90 382 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 BTBD2Q9BX70 525 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 PRRG4Q9BZD6 226 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 ZNF395Q9H8N7 513 aaPredicted RBP15.32■□□□□ 0.04
CLN3-216ENST00000565316 DUSP22Q9NRW4 184 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 MKS1Q9NXB0 559 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 GIN1Q9NXP7 522 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 ATP6V1HQ9UI12 483 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 CLEC4AQ9UMR7 237 aa15.32■□□□□ 0.04
CLN3-216ENST00000565316 RAI1Q7Z5J4 1906 aaPredicted RBP15.32■□□□□ 0.04
CLN3-216ENST00000565316 A0A0J9YW62 118 aa15.31■□□□□ 0.04
CLN3-216ENST00000565316 SMIM23A6NLE4 172 aa15.31■□□□□ 0.04
CLN3-216ENST00000565316 CXCL13O43927 109 aa15.31■□□□□ 0.04
CLN3-216ENST00000565316 PLGP00747 810 aaPredicted RBP15.31■□□□□ 0.04
CLN3-216ENST00000565316 LINGO3P0C6S8 592 aa15.31■□□□□ 0.04
CLN3-216ENST00000565316 NID1P14543 1247 aa15.31■□□□□ 0.04
CLN3-216ENST00000565316 ZNF41P51814 821 aaPredicted RBP15.31■□□□□ 0.04
CLN3-216ENST00000565316 CTBP2P56545 445 aa15.31■□□□□ 0.04
CLN3-216ENST00000565316 CD226Q15762 336 aa15.31■□□□□ 0.04
CLN3-216ENST00000565316 EXOC3L2Q2M3D2 409 aa15.31■□□□□ 0.04
CLN3-216ENST00000565316 BEX5Q5H9J7 111 aa15.31■□□□□ 0.04
CLN3-216ENST00000565316 LRIG3Q6UXM1 1119 aa15.31■□□□□ 0.04
CLN3-216ENST00000565316 TRABD2AQ86V40 505 aa15.31■□□□□ 0.04
CLN3-216ENST00000565316 COX18Q8N8Q8 333 aa15.31■□□□□ 0.04
CLN3-216ENST00000565316 UBLCP1Q8WVY7 318 aaPredicted RBP15.31■□□□□ 0.04
CLN3-216ENST00000565316 STACQ99469 402 aa15.31■□□□□ 0.04
CLN3-216ENST00000565316 GSX2Q9BZM3 304 aa15.31■□□□□ 0.04
CLN3-216ENST00000565316 OR10A4Q9H209 315 aa15.31■□□□□ 0.04
CLN3-216ENST00000565316 FIS1Q9Y3D6 152 aa15.31■□□□□ 0.04
CLN3-216ENST00000565316 TRAF6Q9Y4K3 522 aa15.31■□□□□ 0.04
CLN3-216ENST00000565316 SCDO00767 359 aa15.3■□□□□ 0.04
CLN3-216ENST00000565316 TNFSF11O14788 317 aa15.3■□□□□ 0.04
CLN3-216ENST00000565316 NPHS1O60500 1241 aa15.3■□□□□ 0.04
CLN3-216ENST00000565316 SYNGR4O95473 234 aa15.3■□□□□ 0.04
CLN3-216ENST00000565316 OPN1LWP04000 364 aa15.3■□□□□ 0.04
CLN3-216ENST00000565316 HPGDP15428 266 aa15.3■□□□□ 0.04
CLN3-216ENST00000565316 PAX1P15863 534 aa15.3■□□□□ 0.04
CLN3-216ENST00000565316 DDX5P17844 614 aaKnown RBP15.3■□□□□ 0.04
CLN3-216ENST00000565316 EIF1P41567 113 aaKnown RBP15.3■□□□□ 0.04
CLN3-216ENST00000565316 PRIM2P49643 509 aa15.3■□□□□ 0.04
CLN3-216ENST00000565316 POU6F2P78424 691 aaPredicted RBP15.3■□□□□ 0.04
CLN3-216ENST00000565316 GALNTL6Q49A17 601 aa15.3■□□□□ 0.04
CLN3-216ENST00000565316 HBMQ6B0K9 141 aa15.3■□□□□ 0.04
CLN3-216ENST00000565316 SZRD1Q7Z422 152 aa15.3■□□□□ 0.04
CLN3-216ENST00000565316 YTHDF3Q7Z739 585 aaKnown RBP15.3■□□□□ 0.04
CLN3-216ENST00000565316 CIARTQ8N365 385 aaPredicted RBP15.3■□□□□ 0.04
CLN3-216ENST00000565316 B4GALNT2Q8NHY0 566 aa15.3■□□□□ 0.04
CLN3-216ENST00000565316 PSMA8Q8TAA3 256 aa15.3■□□□□ 0.04
CLN3-216ENST00000565316 TWIST2Q8WVJ9 160 aa15.3■□□□□ 0.04
CLN3-216ENST00000565316 SH3YL1Q96HL8 342 aaPredicted RBP15.3■□□□□ 0.04
CLN3-216ENST00000565316 PIGUQ9H490 435 aa15.3■□□□□ 0.04
CLN3-216ENST00000565316 CSPG4Q6UVK1 2322 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.29■□□□□ 0.04
CLN3-216ENST00000565316 TMEM233B4DJY2 109 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 H7C1Q1 480 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 SCAMP2O15127 329 aaKnown RBP15.29■□□□□ 0.04
CLN3-216ENST00000565316 LY6G6DO95868 133 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 HMGN2P05204 90 aaKnown RBP15.29■□□□□ 0.04
CLN3-216ENST00000565316 CHRNGP07510 517 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 EFNA1P20827 205 aaPredicted RBP15.29■□□□□ 0.04
CLN3-216ENST00000565316 ME2P23368 584 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 HPCAL1P37235 193 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 ARL13AQ5H913 290 aaPredicted RBP15.29■□□□□ 0.04
CLN3-216ENST00000565316 PDSS1Q5T2R2 415 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 CCNJQ5T5M9 372 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 PPP4R4Q6NUP7 873 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 BEND4Q6ZU67 534 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 MTERF4Q7Z6M4 381 aaKnown RBP15.29■□□□□ 0.04
CLN3-216ENST00000565316 DDIASQ8IXT1 998 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms