RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 FAM110BQ8TC76 370 aa15.06■□□□□ 0
CLN3-211ENST00000564091 ROBO4Q8WZ75 1007 aa15.06■□□□□ 0
CLN3-211ENST00000564091 OSTF1Q92882 214 aa15.06■□□□□ 0
CLN3-211ENST00000564091 ZBTB8AQ96BR9 441 aa15.06■□□□□ 0
CLN3-211ENST00000564091 PPCDCQ96CD2 204 aa15.06■□□□□ 0
CLN3-211ENST00000564091 TSSK3Q96PN8 268 aa15.06■□□□□ 0
CLN3-211ENST00000564091 TMEM204Q9BSN7 226 aa15.06■□□□□ 0
CLN3-211ENST00000564091 CXorf56Q9H5V9 222 aa15.06■□□□□ 0
CLN3-211ENST00000564091 REEP4Q9H6H4 257 aa15.06■□□□□ 0
CLN3-211ENST00000564091 C1orf109Q9NX04 203 aa15.06■□□□□ 0
CLN3-211ENST00000564091 SH3BP4Q9P0V3 963 aa15.06■□□□□ 0
CLN3-211ENST00000564091 BAIAP2L1Q9UHR4 511 aa15.06■□□□□ 0
CLN3-211ENST00000564091 FBN3Q75N90 2809 aa15.06■□□□□ 0
CLN3-211ENST00000564091 C7orf72A4D263 438 aa15.05■□□□□ -0
CLN3-211ENST00000564091 NPIPB8E9PQR5 432 aa15.05■□□□□ -0
CLN3-211ENST00000564091 H3BQF6 201 aa15.05■□□□□ -0
CLN3-211ENST00000564091 SLC28A1O00337 649 aa15.05■□□□□ -0
CLN3-211ENST00000564091 HS3ST1O14792 307 aa15.05■□□□□ -0
CLN3-211ENST00000564091 HPGDP15428 266 aa15.05■□□□□ -0
CLN3-211ENST00000564091 PRPH2P23942 346 aa15.05■□□□□ -0
CLN3-211ENST00000564091 SHC1P29353 583 aa15.05■□□□□ -0
CLN3-211ENST00000564091 RNF144AP50876 292 aaPredicted RBP15.05■□□□□ -0
CLN3-211ENST00000564091 ZNF41P51814 821 aaPredicted RBP15.05■□□□□ -0
CLN3-211ENST00000564091 CARD18P57730 90 aa15.05■□□□□ -0
CLN3-211ENST00000564091 DNAJB13P59910 316 aa15.05■□□□□ -0
CLN3-211ENST00000564091 ZNF844Q08AG5 666 aa15.05■□□□□ -0
CLN3-211ENST00000564091 CAPRIN1Q14444 709 aaKnown RBP15.05■□□□□ -0
CLN3-211ENST00000564091 TSC22D1Q15714 1073 aa15.05■□□□□ -0
CLN3-211ENST00000564091 CD226Q15762 336 aa15.05■□□□□ -0
CLN3-211ENST00000564091 Q6ZSR9 355 aa15.05■□□□□ -0
CLN3-211ENST00000564091 STK32CQ86UX6 486 aa15.05■□□□□ -0
CLN3-211ENST00000564091 IFT20Q8IY31 132 aa15.05■□□□□ -0
CLN3-211ENST00000564091 LILRA2Q8N149 483 aa15.05■□□□□ -0
CLN3-211ENST00000564091 ZNF611Q8N823 705 aa15.05■□□□□ -0
CLN3-211ENST00000564091 OR6Y1Q8NGX8 325 aa15.05■□□□□ -0
CLN3-211ENST00000564091 ZFP28Q8NHY6 868 aa15.05■□□□□ -0
CLN3-211ENST00000564091 RAB3IL1Q8TBN0 382 aa15.05■□□□□ -0
CLN3-211ENST00000564091 ACTRT2Q8TDY3 377 aa15.05■□□□□ -0
CLN3-211ENST00000564091 AKAP1Q92667 903 aaKnown RBP eCLIP15.05■□□□□ -0
CLN3-211ENST00000564091 ZBED6CLQ96FA7 236 aaPredicted RBP15.05■□□□□ -0
CLN3-211ENST00000564091 FANCFQ9NPI8 374 aa15.05■□□□□ -0
CLN3-211ENST00000564091 UBQLN4Q9NRR5 601 aa15.05■□□□□ -0
CLN3-211ENST00000564091 GLRX2Q9NS18 164 aa15.05■□□□□ -0
CLN3-211ENST00000564091 ADAM21Q9UKJ8 722 aa15.05■□□□□ -0
CLN3-211ENST00000564091 LAMP3Q9UQV4 416 aa15.05■□□□□ -0
CLN3-211ENST00000564091 GPR52Q9Y2T5 361 aa15.05■□□□□ -0
CLN3-211ENST00000564091 FIS1Q9Y3D6 152 aa15.05■□□□□ -0
CLN3-211ENST00000564091 COL6A5A8TX70 2615 aa15.04■□□□□ -0
CLN3-211ENST00000564091 SCDO00767 359 aa15.04■□□□□ -0
CLN3-211ENST00000564091 RGS14O43566 566 aa15.04■□□□□ -0
CLN3-211ENST00000564091 PLIN3O60664 434 aa15.04■□□□□ -0
CLN3-211ENST00000564091 ALOX5P09917 674 aa15.04■□□□□ -0
CLN3-211ENST00000564091 SDC1P18827 310 aa15.04■□□□□ -0
CLN3-211ENST00000564091 PSMB1P20618 241 aaKnown RBP15.04■□□□□ -0
CLN3-211ENST00000564091 ME2P23368 584 aa15.04■□□□□ -0
CLN3-211ENST00000564091 AGTR1P30556 359 aa15.04■□□□□ -0
CLN3-211ENST00000564091 SFTPDP35247 375 aa15.04■□□□□ -0
CLN3-211ENST00000564091 PRIM2P49643 509 aa15.04■□□□□ -0
CLN3-211ENST00000564091 NAA20P61599 178 aa15.04■□□□□ -0
CLN3-211ENST00000564091 TNK1Q13470 666 aa15.04■□□□□ -0
CLN3-211ENST00000564091 RFTN2Q52LD8 501 aaPredicted RBP15.04■□□□□ -0
CLN3-211ENST00000564091 COX18Q8N8Q8 333 aa15.04■□□□□ -0
CLN3-211ENST00000564091 CCDC63Q8NA47 563 aa15.04■□□□□ -0
CLN3-211ENST00000564091 B4GALNT2Q8NHY0 566 aa15.04■□□□□ -0
CLN3-211ENST00000564091 ABHD3Q8WU67 409 aa15.04■□□□□ -0
CLN3-211ENST00000564091 JADE3Q92613 823 aa15.04■□□□□ -0
CLN3-211ENST00000564091 S100PBPQ96BU1 408 aa15.04■□□□□ -0
CLN3-211ENST00000564091 METTL2AQ96IZ6 378 aaKnown RBP15.04■□□□□ -0
CLN3-211ENST00000564091 FCRL1Q96LA6 429 aa15.04■□□□□ -0
CLN3-211ENST00000564091 KLHL15Q96M94 604 aa15.04■□□□□ -0
CLN3-211ENST00000564091 MS4A4EQ96PG1 132 aa15.04■□□□□ -0
CLN3-211ENST00000564091 TXLNGYQ9BZA5 131 aa15.04■□□□□ -0
CLN3-211ENST00000564091 IQCGQ9H095 443 aaKnown RBP15.04■□□□□ -0
CLN3-211ENST00000564091 OXSMQ9NWU1 459 aa15.04■□□□□ -0
CLN3-211ENST00000564091 NTMQ9P121 344 aa15.04■□□□□ -0
CLN3-211ENST00000564091 AZIN1O14977 448 aa15.03■□□□□ -0
CLN3-211ENST00000564091 EFNA2O43921 213 aa15.03■□□□□ -0
CLN3-211ENST00000564091 TBX19O60806 448 aa15.03■□□□□ -0
CLN3-211ENST00000564091 TUBBP07437 444 aa15.03■□□□□ -0
CLN3-211ENST00000564091 LINGO3P0C6S8 592 aa15.03■□□□□ -0
CLN3-211ENST00000564091 LINC00032P0C843 101 aa15.03■□□□□ -0
CLN3-211ENST00000564091 CPA3P15088 417 aa15.03■□□□□ -0
CLN3-211ENST00000564091 FRKP42685 505 aaPredicted RBP15.03■□□□□ -0
CLN3-211ENST00000564091 CCT5P48643 541 aa15.03■□□□□ -0
CLN3-211ENST00000564091 RPL38P63173 70 aaKnown RBP15.03■□□□□ -0
CLN3-211ENST00000564091 FOXF1Q12946 379 aa15.03■□□□□ -0
CLN3-211ENST00000564091 PDSS1Q5T2R2 415 aa15.03■□□□□ -0
CLN3-211ENST00000564091 GTF2IRD2BQ6EKJ0 949 aa15.03■□□□□ -0
CLN3-211ENST00000564091 NUFIP2Q7Z417 695 aaKnown RBP15.03■□□□□ -0
CLN3-211ENST00000564091 GTF2IRD2Q86UP8 949 aa15.03■□□□□ -0
CLN3-211ENST00000564091 TRABD2AQ86V40 505 aa15.03■□□□□ -0
CLN3-211ENST00000564091 MAPK1IP1LQ8NDC0 245 aa15.03■□□□□ -0
CLN3-211ENST00000564091 LILRB1Q8NHL6 650 aaPredicted RBP15.03■□□□□ -0
CLN3-211ENST00000564091 ZNF764Q96H86 408 aaPredicted RBP15.03■□□□□ -0
CLN3-211ENST00000564091 CCT7Q99832 543 aa15.03■□□□□ -0
CLN3-211ENST00000564091 SRXN1Q9BYN0 137 aa15.03■□□□□ -0
CLN3-211ENST00000564091 TUBB1Q9H4B7 451 aa15.03■□□□□ -0
CLN3-211ENST00000564091 HHATLQ9HCP6 504 aa15.03■□□□□ -0
CLN3-211ENST00000564091 ACSS1Q9NUB1 689 aaPredicted RBP15.03■□□□□ -0
CLN3-211ENST00000564091 FBN1P35555 2871 aaKnown RBP15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms