RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 ZNF175Q9Y473 711 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 A0A1W2PNV4 684 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 H3BNH8 94 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 MSTNO14793 375 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 FCGR2AP12318 317 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 SOAT1P35610 550 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 CLDN15P56746 228 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 CLDN20P56880 219 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 OCRLQ01968 901 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 FGFBP1Q14512 234 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 TMEM44Q2T9K0 475 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 TNFAIP8L3Q5GJ75 292 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 CAMKMTQ7Z624 323 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 MTERF4Q7Z6M4 381 aaKnown RBP15.18■□□□□ 0.02
CLK3-210ENST00000563112 WDR75Q8IWA0 830 aaKnown RBP15.18■□□□□ 0.02
CLK3-210ENST00000563112 B4GALNT2Q8NHY0 566 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 LINC01560Q8TB33 94 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 NUDT8Q8WV74 236 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 FIG4Q92562 907 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 SH3YL1Q96HL8 342 aaPredicted RBP15.18■□□□□ 0.02
CLK3-210ENST00000563112 PRRG4Q9BZD6 226 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 DPY30Q9C005 99 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 GPATCH2Q9NW75 528 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 GALNT8Q9NY28 637 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 AKAP9Q99996 3911 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 HIVEP1P15822 2718 aa15.18■□□□□ 0.02
CLK3-210ENST00000563112 MAP1AP78559 2803 aaPredicted RBP15.17■□□□□ 0.02
CLK3-210ENST00000563112 TNFSF12-TNFSF13A0A0A6YY99 330 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 FAM221AA4D161 298 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 A8MXE2 369 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 SHISA8B8ZZ34 492 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 H0YC42 278 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 EIF1AYO14602 144 aaKnown RBP15.17■□□□□ 0.02
CLK3-210ENST00000563112 TNFSF13O75888 250 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 SMNDC1O75940 238 aaKnown RBP eCLIP15.17■□□□□ 0.02
CLK3-210ENST00000563112 DNAJA1P31689 397 aaKnown RBP15.17■□□□□ 0.02
CLK3-210ENST00000563112 TPD52P55327 224 aaPredicted RBP15.17■□□□□ 0.02
CLK3-210ENST00000563112 MPP2Q14168 576 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 PON3Q15166 354 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 DCST2Q5T1A1 773 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 PPP4R4Q6NUP7 873 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 GTPBP8Q8N3Z3 284 aaPredicted RBP15.17■□□□□ 0.02
CLK3-210ENST00000563112 METTL25Q8N6Q8 603 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 ANKRD42Q8N9B4 389 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 VPS37AQ8NEZ2 397 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 OR5AK3PQ8NH89 298 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 PHOSPHO1Q8TCT1 267 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 ZBTB9Q96C00 473 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 SORT1Q99523 831 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 C20orf27Q9GZN8 174 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 MED17Q9NVC6 651 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 PAQR5Q9NXK6 330 aaPredicted RBP15.17■□□□□ 0.02
CLK3-210ENST00000563112 NDRG3Q9UGV2 375 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 CELSR1Q9NYQ6 3014 aa15.17■□□□□ 0.02
CLK3-210ENST00000563112 UQCRHLA0A096LP55 91 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 C7orf72A4D263 438 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 DUXAA6NLW8 204 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 GTPBP1O00178 669 aaKnown RBP15.16■□□□□ 0.02
CLK3-210ENST00000563112 RNASET2O00584 256 aaKnown RBP15.16■□□□□ 0.02
CLK3-210ENST00000563112 CASKO14936 926 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 ERLIN1O75477 346 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 GOSR1O95249 250 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 CD1EP15812 388 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 LBPP18428 481 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 ME2P23368 584 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 CPOXP36551 454 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 EIF1P41567 113 aaKnown RBP15.16■□□□□ 0.02
CLK3-210ENST00000563112 EIF1AXP47813 144 aaKnown RBP15.16■□□□□ 0.02
CLK3-210ENST00000563112 HBA1P69905 142 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 SIRPAP78324 504 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 PDSS1Q5T2R2 415 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 ANXA8L1Q5VT79 327 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 OR4F3Q6IEY1 312 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 C6orf120Q7Z4R8 191 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 LRRC34Q8IZ02 419 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 FNDC9Q8TBE3 224 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 NRGNQ92686 78 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 NINJ1Q92982 152 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 STARD4Q96DR4 205 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 ZNF845Q96IR2 970 aaPredicted RBP15.16■□□□□ 0.02
CLK3-210ENST00000563112 DACH2Q96NX9 599 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 OR7D2Q96RA2 312 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 NUF2Q9BZD4 464 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 HAO1Q9UJM8 370 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 ABCA4P78363 2273 aa15.16■□□□□ 0.02
CLK3-210ENST00000563112 SYNGR4O95473 234 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 NUDT14O95848 222 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 MATN1P21941 496 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 ART1P52961 327 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 CLNS1AP54105 237 aaKnown RBP15.15■□□□□ 0.02
CLK3-210ENST00000563112 ATP12AP54707 1039 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 RAC1P63000 192 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 BST1Q10588 318 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 TESK1Q15569 626 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 CD226Q15762 336 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 PLPPR5Q32ZL2 321 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 SPNS3Q6ZMD2 512 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 GGNQ86UU5 652 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 CDC20BQ86Y33 519 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 OR8J2Q8NGG1 315 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms