RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 GIMD1P0DJR0 217 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 MYL12AP19105 171 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 PGCP20142 388 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 HTR1EP28566 365 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 STAT5AP42229 794 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 GSTM5P46439 218 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 STARP49675 285 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 MYBPC1Q00872 1141 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 STK11Q15831 433 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 GLYR1Q49A26 553 aaPredicted RBP5.04□□□□□ -1.6
VPS13C-209ENST00000560637 TTC23Q5W5X9 447 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 SPINK14Q6IE38 97 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 RHBDD2Q6NTF9 364 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 SLCO6A1Q86UG4 719 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 ZNF619Q8N2I2 560 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 C10orf111Q8N326 155 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 B3GNT7Q8NFL0 401 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 DNAJB8Q8NHS0 232 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 HMGCLL1Q8TB92 370 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 TAMM41Q96BW9 452 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 MOAP1Q96BY2 351 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 FER1L6-AS2Q96M78 137 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 ERMAPQ96PL5 475 aaPredicted RBP5.04□□□□□ -1.6
VPS13C-209ENST00000560637 ADI1Q9BV57 179 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 PRRG3Q9BZD7 231 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 PRMT8Q9NR22 394 aaPredicted RBP5.04□□□□□ -1.6
VPS13C-209ENST00000560637 UBQLN4Q9NRR5 601 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 TMEM181Q9P2C4 612 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 TCFL5Q9UL49 500 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 CAMK2AQ9UQM7 478 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 DTX4Q9Y2E6 619 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 MTCL1Q9Y4B5 1905 aaKnown RBP5.04□□□□□ -1.6
VPS13C-209ENST00000560637 HEATR5BQ9P2D3 2071 aa5.04□□□□□ -1.6
VPS13C-209ENST00000560637 RIIAD1A6NNX1 92 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 EFCAB9A8MZ26 197 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 H0YIG0 161 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 HMGN4O00479 90 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 XPNPEP2O43895 674 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 TNFRSF21O75509 655 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 NTN1O95631 604 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 ZNF24P17028 368 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 DPP4P27487 766 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 CPOXP36551 454 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 SOX3P41225 446 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 GCGRP47871 477 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 SLC6A9P48067 706 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 TRA2BP62995 288 aaKnown RBP5.03□□□□□ -1.6
VPS13C-209ENST00000560637 EEF1A1P68104 462 aaKnown RBP5.03□□□□□ -1.6
VPS13C-209ENST00000560637 INSM1Q01101 510 aaPredicted RBP5.03□□□□□ -1.6
VPS13C-209ENST00000560637 SRSF6Q13247 344 aaKnown RBP5.03□□□□□ -1.6
VPS13C-209ENST00000560637 TRAM2Q15035 370 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 PDK3Q15120 406 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 INPP5JQ15735 1006 aaPredicted RBP5.03□□□□□ -1.6
VPS13C-209ENST00000560637 LIN52Q52LA3 116 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 PRAMEF8Q5VWM4 474 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 PRAMEF7Q5VXH5 474 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 SLC22A10Q63ZE4 541 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 WDR74Q6RFH5 385 aaPredicted RBP5.03□□□□□ -1.6
VPS13C-209ENST00000560637 OPN5Q6U736 354 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 OVCH1Q7RTY7 1134 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.03□□□□□ -1.6
VPS13C-209ENST00000560637 LRRC56Q8IYG6 542 aaPredicted RBP5.03□□□□□ -1.6
VPS13C-209ENST00000560637 PROKR2Q8NFJ6 384 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 OR10G3Q8NGC4 313 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 OR5M9Q8NGP3 310 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 GPR119Q8TDV5 335 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 TSPEARQ8WU66 669 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 ZHX1-C8orf76Q96EF9 292 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 SLC41A3Q96GZ6 507 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 SLC29A1Q99808 456 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 ORAI3Q9BRQ5 295 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 BTBD2Q9BX70 525 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 POLDIP3Q9BY77 421 aaKnown RBP5.03□□□□□ -1.6
VPS13C-209ENST00000560637 C1orf21Q9H246 121 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 NMNAT1Q9HAN9 279 aaPredicted RBP5.03□□□□□ -1.6
VPS13C-209ENST00000560637 ELL3Q9HB65 397 aaPredicted RBP5.03□□□□□ -1.6
VPS13C-209ENST00000560637 LYRM4Q9HD34 91 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 C14orf105Q9NVL8 296 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 B4GALT7Q9UBV7 327 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 IFT52Q9Y366 437 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 ASPDHA6ND91 283 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 SNX4O95219 450 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 DDAH2O95865 285 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 ACP2P11117 423 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 CD59P13987 128 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 FUT1P19526 365 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 TACR3P29371 465 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 GPR143P51810 404 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 SELENOWP63302 87 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 RNF4P78317 190 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 RPP38P78345 283 aaKnown RBP5.03□□□□□ -1.6
VPS13C-209ENST00000560637 RBBP4Q09028 425 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 DAG1Q14118 895 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 IL11RAQ14626 422 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 GINS1Q14691 196 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 SHBQ15464 509 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 SGCAQ16586 387 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.03□□□□□ -1.6
VPS13C-209ENST00000560637 ENTPD8Q5MY95 495 aa5.03□□□□□ -1.6
VPS13C-209ENST00000560637 SLC6A19Q695T7 634 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms