RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 DRD4P21917 467 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 TCEA1P23193 301 aaKnown RBP12.34□□□□□ -0.43
SHMT2-228ENST00000557302 MSX1P28360 303 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 ADSLP30566 484 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-228ENST00000557302 RNF144AP50876 292 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-228ENST00000557302 CRYZQ08257 329 aaKnown RBP12.34□□□□□ -0.43
SHMT2-228ENST00000557302 FADDQ13158 208 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 RGNQ15493 299 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 MAPRE2Q15555 327 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 ZNF141Q15928 474 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 SYPL1Q16563 259 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 GXYLT1Q4G148 440 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 NHSL2Q5HYW2 709 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 EMC4Q5J8M3 183 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 PDZK1Q5T2W1 519 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 VASNQ6EMK4 673 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 MTFR2Q6P444 385 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 FRRS1Q6ZNA5 592 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 LRRC74BQ6ZQY2 392 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 DHDDSQ86SQ9 333 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 RETREG3Q86VR2 466 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 ZNF619Q8N2I2 560 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 DPP10Q8N608 796 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 OIT3Q8WWZ8 545 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 ABTB1Q969K4 478 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-228ENST00000557302 C1GALT1C1Q96EU7 318 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 SH3YL1Q96HL8 342 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-228ENST00000557302 SFXN2Q96NB2 322 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 SAP130Q9H0E3 1048 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 PNPLA3Q9NST1 481 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 CALML5Q9NZT1 146 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 VAPAQ9P0L0 249 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 CORO2BQ9UQ03 480 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 GTF3C1Q12789 2109 aa12.34□□□□□ -0.43
SHMT2-228ENST00000557302 NCKAP5O14513 1909 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 SERINC4A6NH21 518 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 EVPLLA8MZ36 301 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 FAM47E-STBD1D6RA91 191 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 E9PLN8 166 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 ZIC3O60481 467 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 CCDC22O60826 627 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 UGT2B17O75795 530 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 ACTL6AO96019 429 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 LDLRP01130 860 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 CHRM4P08173 479 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 BMP7P18075 431 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 ZNF117Q03924 483 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 CHRNEQ04844 493 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 NFYCQ13952 458 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 GNA13Q14344 377 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 RAET1LQ5VY80 246 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 AP1ARQ63HQ0 302 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 AAGABQ6PD74 315 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 DLEU7Q6UYE1 221 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 C3P1Q6ZMU1 363 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 B4GALNT2Q8NHY0 566 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 SSC4DQ8WTU2 575 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 TIMP4Q99727 224 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 VKORC1Q9BQB6 163 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 UGT2B28Q9BY64 529 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 SLC38A1Q9H2H9 487 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 KCNE5Q9UJ90 142 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 RPH3AQ9Y2J0 694 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-228ENST00000557302 MEMO1Q9Y316 297 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 GMEB1Q9Y692 573 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 DOPEY1Q5JWR5 2465 aa12.33□□□□□ -0.44
SHMT2-228ENST00000557302 DIDO1Q9BTC0 2240 aaKnown RBP12.33□□□□□ -0.44
SHMT2-228ENST00000557302 A0A087WZY1 265 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 CENPVL1A0A0U1RR11 272 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 BBIP1A8MTZ0 92 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 SNX3O60493 162 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 WDR1O75083 606 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 BCHEP06276 602 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 TFPTP0C1Z6 253 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 UBL4AP11441 157 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 BMP2P12643 396 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 ACVR2AP27037 513 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 ZNF41P51814 821 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-228ENST00000557302 CRISP3P54108 245 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 SUMO3P55854 103 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-228ENST00000557302 GFRA1P56159 465 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 MAPK14Q16539 360 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 MMEL1Q495T6 779 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 GLYR1Q49A26 553 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-228ENST00000557302 COQ5Q5HYK3 327 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 ZNF585AQ6P3V2 769 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 ENPP6Q6UWR7 440 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 ARSKQ6UWY0 536 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 EIF3MQ7L2H7 374 aaKnown RBP12.32□□□□□ -0.44
SHMT2-228ENST00000557302 SNX32Q86XE0 403 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 TMCO5AQ8N6Q1 288 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 SLC38A5Q8WUX1 472 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 PMM1Q92871 262 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 CCDC120Q96HB5 630 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 CGREF1Q99674 301 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 MTHFD2LQ9H903 347 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-228ENST00000557302 ALKBH4Q9NXW9 302 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 ARMCX1Q9P291 453 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 CAMK2AQ9UQM7 478 aa12.32□□□□□ -0.44
SHMT2-228ENST00000557302 VDAC3Q9Y277 283 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms