RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 PRB1P04280 392 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 ETS2P15036 469 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 HPGDP15428 266 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 NCK1P16333 377 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 PGM1P36871 562 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 EEF1A1P68104 462 aaKnown RBP11.69□□□□□ -0.54
SHMT2-227ENST00000557269 DMTNQ08495 405 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 FGFBP1Q14512 234 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 GLIPR1L2Q4G1C9 344 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 TIGD3Q6B0B8 471 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 ERICH5Q6P6B1 374 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 CBLN3Q6UW01 205 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 ZNF836Q6ZNA1 936 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 CCDC80Q76M96 950 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 PACS2Q86VP3 889 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 LSRQ86X29 649 aaPredicted RBP11.69□□□□□ -0.54
SHMT2-227ENST00000557269 CLIP4Q8N3C7 705 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 CISD2Q8N5K1 135 aaKnown RBP11.69□□□□□ -0.54
SHMT2-227ENST00000557269 ZNF527Q8NB42 609 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 LSM14AQ8ND56 463 aaKnown RBP11.69□□□□□ -0.54
SHMT2-227ENST00000557269 PHOSPHO1Q8TCT1 267 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 CNOT9Q92600 299 aaKnown RBP11.69□□□□□ -0.54
SHMT2-227ENST00000557269 TAMM41Q96BW9 452 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 ZNF524Q96C55 264 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 BTBD10Q9BSF8 475 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 TTTY12Q9BZ98 90 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 RLIMQ9NVW2 624 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 MED11Q9P086 117 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 EGFL7Q9UHF1 273 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 CARD8Q9Y2G2 431 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 IGSF10Q6WRI0 2623 aa11.69□□□□□ -0.54
SHMT2-227ENST00000557269 BSNQ9UPA5 3926 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 NINQ8N4C6 2090 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 TMEM229AB2RXF0 380 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 ADAM11O75078 769 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 DBIP07108 87 aaKnown RBP11.68□□□□□ -0.54
SHMT2-227ENST00000557269 CELA3AP09093 270 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 PABPC4LP0CB38 370 aaKnown RBP11.68□□□□□ -0.54
SHMT2-227ENST00000557269 HSD17B1P14061 328 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 HTR1EP28566 365 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 ADH7P40394 386 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 MASP1P48740 699 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 CLK3P49761 638 aaKnown RBP11.68□□□□□ -0.54
SHMT2-227ENST00000557269 NCALDP61601 193 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 KCNJ10P78508 379 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 ZNF117Q03924 483 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 GABPB1Q06547 395 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-227ENST00000557269 C17orf67Q0P5P2 114 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 VEZF1Q14119 521 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 SOWAHCQ53LP3 525 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-227ENST00000557269 SAMD4BQ5PRF9 694 aaKnown RBP11.68□□□□□ -0.54
SHMT2-227ENST00000557269 PLCZ1Q86YW0 608 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 PEX5LQ8IYB4 626 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 TMEM251Q8N6I4 163 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 FADS6Q8N9I5 356 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 SMYD1Q8NB12 490 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 OR2M3Q8NG83 312 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 OR1J4Q8NGS1 313 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 WDR60Q8WVS4 1066 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 PMM1Q92871 262 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 SH3YL1Q96HL8 342 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-227ENST00000557269 ZNF597Q96LX8 424 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 WFDC6Q9BQY6 131 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 THTPAQ9BU02 230 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 CADM1Q9BY67 442 aaKnown RBP11.68□□□□□ -0.54
SHMT2-227ENST00000557269 PCDHAC1Q9H158 963 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 TSPAN10Q9H1Z9 355 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-227ENST00000557269 DSN1Q9H410 356 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 ZFP64Q9NPA5 681 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 PPP4R1LQ9P1A2 415 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 ZNF443Q9Y2A4 671 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-227ENST00000557269 C15orf41Q9Y2V0 281 aa11.68□□□□□ -0.54
SHMT2-227ENST00000557269 NCKAP5O14513 1909 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 IGLV3-32A0A0A0MS00 114 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 GTPBP1O00178 669 aaKnown RBP11.67□□□□□ -0.54
SHMT2-227ENST00000557269 CXCR6O00574 342 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 GSC2O15499 205 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 HCRTR2O43614 444 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 DNAJA2O60884 412 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 WISP1O95388 367 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 CSTAP01040 98 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 THBS1P07996 1170 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 UBTFL6P0CB48 400 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-227ENST00000557269 UBL4AP11441 157 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 NID1P14543 1247 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 IL7RP16871 459 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 GGT1P19440 569 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 CD247P20963 164 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 MST1P26927 711 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 KDELR2P33947 212 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 MAGEA5P43359 124 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 PPIAP62937 165 aaKnown RBP11.67□□□□□ -0.54
SHMT2-227ENST00000557269 FOXK1P85037 733 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 MS4A2Q01362 244 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 PLGLB1Q02325 96 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 SKP2Q13309 424 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 FXNQ16595 210 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 DUSP7Q16829 419 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 HYAL4Q2M3T9 481 aa11.67□□□□□ -0.54
SHMT2-227ENST00000557269 ZNF311Q5JNZ3 666 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms